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Name : RBRH_03238 (RBRH_03238) Accession : YP_004028001.1 Strain : Burkholderia rhizoxinica HKI 454 Genome accession: NC_014722 Putative virulence/resistance : Virulence Product : Type 4 pili biogenesis protein pilB (nuleotide-binding protein) Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 318420 - 319910 bp Length : 1491 bp Strand : - Note : - DNA sequence : ATGGCGCGGGCGCTACAAGCGCGCGACGATACGCGGGTATCCATCGTATTGCGCTGTCCGCGCATCGCCAGCATGCCCCA TCACACGTTGTTTGCGACCGTGCCGCCATCCACGCCGACACACGGCGCCGATCTCACCCCTATGCAGCCCTCGGCTGCGC AGGCCGTGCCGCGCGGACCCGATGCGCACGCACCTTCCCGTTTCACGGAGCCGGTACGCTGCGCCGCGGCGCCAATTGCC ACCGTGCCGACGCCGCGTATCGCGCAACGTGCTCGCGCCAACGCTCACGCGCGGCCATCAGACGACACTGACGCGCCAGC AGTACGCCTGCTGGACGATCTATTCGCACAAGCCAGTGCGTGTCGCGCCTCGGATATCCATATCGAGCCAGGCCGACACC AATGGCACATTCGGCTGCGGATCGACGGCCGGCTACATCGCCTCGACAATCCGCCCGCGCACCTGCGTGACGCCGTCACC ACACGGATCAAAGTGTTGGCGCGGCTGGACATCGCGCAGCGGCGCGCGCCCCAGGACGGCCGGTTGCGCATCGCGGTGTC CGGCGCCGGATTCGATGAATTCCGCGTGTCGACGCTGCCCACGGTATTCGGCGAAAAAGTGGTGCTGCGCCGCCTTGATG CGCTGCCCGATGGGTTGGATCTGACAGGACTGGGCTTTGATGCCACCCAGTTGTGCGCCGTACAGCATGCGTTGCGCGCC CGACAGGGCATGGTGCTGGTCACCGGGCCCACGGGCAGCGGCAAGACGCTGACGCTCTATACCTTCATGCGCGAACTCGA TCGCGATGCGTTCAATCTTTGTACGATCGAGGACCCGTCCGAGATCGAGCTTGCCGGCATCAACCAGGTGTCGGTCAACG ACCGGGCAGGCCTGGGTTTCGCAGCGGTGCTGCGCGCGTTGCTGCGACAAGACCCGGACGTGATCATGGTCGGCGAGATC CGCGATACGGAAACCGCCTCGGTCGCCATCAACGCCGCACAGACCGGGCATTTGCTGCTTGCTACGCTGCACACCAATGA TGCGCCGGCGACGCTCGCGCGACTCACGGACCTGGGCGTGGAACCGTACAACGTGGCGGCAGCGGTCAAGCTGATTACGG CGCAACGGCTGGTGCGGCGGTTATGCAGCGCGTGCCGACTCGCCGATACGCCCGACCCCGTCGCGCTGCGTGCAGCCGGC ATGACGGCCGCGCATGTTGACCAAGCGTTGGCGGGCTGTTGGCAATCCTATCGACCGGTTGGCTGCACGGCATGCCGCGG CACCGGCTTTGCGGGTCGCTGCGCCATCCATCAGGTAGTACCCGTGACCGCCGCACTGCAACAGCGCATCGCAGCACGGA CGCCGACCCATGCGCTGGCAGACGCGATGCGCGCAGCCGGCCTGCAAACATTGCGGCAATCCGCGCTCGCGCGCGTGCGC GATGGAACGACATCGCTGCATGAAGCCCTTGCGGTGACGGACGACGCGTGA Protein sequence : MARALQARDDTRVSIVLRCPRIASMPHHTLFATVPPSTPTHGADLTPMQPSAAQAVPRGPDAHAPSRFTEPVRCAAAPIA TVPTPRIAQRARANAHARPSDDTDAPAVRLLDDLFAQASACRASDIHIEPGRHQWHIRLRIDGRLHRLDNPPAHLRDAVT TRIKVLARLDIAQRRAPQDGRLRIAVSGAGFDEFRVSTLPTVFGEKVVLRRLDALPDGLDLTGLGFDATQLCAVQHALRA RQGMVLVTGPTGSGKTLTLYTFMRELDRDAFNLCTIEDPSEIELAGINQVSVNDRAGLGFAAVLRALLRQDPDVIMVGEI RDTETASVAINAAQTGHLLLATLHTNDAPATLARLTDLGVEPYNVAAAVKLITAQRLVRRLCSACRLADTPDPVALRAAG MTAAHVDQALAGCWQSYRPVGCTACRGTGFAGRCAIHQVVPVTAALQQRIAARTPTHALADAMRAAGLQTLRQSALARVR DGTTSLHEALAVTDDA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 4e-70 | 45 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 3e-70 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| RBRH_03238 | YP_004028001.1 | Type 4 pili biogenesis protein pilB (nuleotide-binding protein) | VFG2426 | Protein | 5e-112 | 59 |
| RBRH_03238 | YP_004028001.1 | Type 4 pili biogenesis protein pilB (nuleotide-binding protein) | VFG0233 | Protein | 2e-89 | 48 |
| RBRH_03238 | YP_004028001.1 | Type 4 pili biogenesis protein pilB (nuleotide-binding protein) | VFG2048 | Protein | 6e-70 | 45 |
| RBRH_03238 | YP_004028001.1 | Type 4 pili biogenesis protein pilB (nuleotide-binding protein) | VFG0112 | Protein | 1e-84 | 45 |
| RBRH_03238 | YP_004028001.1 | Type 4 pili biogenesis protein pilB (nuleotide-binding protein) | VFG1876 | Protein | 2e-70 | 43 |
| RBRH_03238 | YP_004028001.1 | Type 4 pili biogenesis protein pilB (nuleotide-binding protein) | VFG0182 | Protein | 2e-62 | 41 |
