Gene Information

Name : RBRH_03840 (RBRH_03840)
Accession : YP_004029623.1
Strain : Burkholderia rhizoxinica HKI 454
Genome accession: NC_014722
Putative virulence/resistance : Virulence
Product : lipoprotein releasing system ATP-binding protein lolD
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1887151 - 1887921 bp
Length : 771 bp
Strand : -
Note : -

DNA sequence : 
GTGCGCGCGTGCGTCCGGCCGAGGCATTGCGCTATGAGTAAAGCAATGAACGAGCAGCAAATCGTGCTGGCCGCGACCAG
CATATCGAAGACCTTTGTGCAGGGTGGCCAGCCGGTGCCGGTGCTGGCCGACGCGCAACTGCATGTGTATCGCGGCGAGA
AGCTGGCCATCGTCGGCGCGTCGGGCTCCGGCAAGAGTACGCTGCTGCATCTGCTGGGCGGGCTCGACGAGCCCAGTGCG
GGGCGTGTCGCGCTATTGGGCCGGCCGTTTTCGCACCTAGCGGAGCGTGAGCGCAACGATTTGCGCAATCGCGCCCTGGG
TTTCGTCTATCAGTTTCATCATCTGCTGCCCGAATTTACCGCGCTGGACAACGTCGCGATGCCGCTGCGGATCCGCCGGA
TGCCGGTCGAAGGCGCGCGTCGCGAGGCGATGGCCACGCTGGAGCGCGTCGGCATCGCGCATCGCGCGAAACACCGGCCC
GGAGAGCTGTCCGGGGGCGAACGGCAGCGCGTGGCGATCGCGCGCGCGCTGGTGACGCGGCCCGCGTGCGTGCTGGCGGA
CGAGCCGACTGGCAACCTTGATGGCCATACTGCGGAAACGGTGTTCCAGTTGATGTTGGAGTTGTCGCGCACGTTCGAGA
CGAGCTTCGTGATCGTCACGCACGATATCGAGTTGGCCGCGCGCTGCGACCGGGTATTACGTTTGCGGGACGGCGTGCTG
CATGATGAAACAACGGTGGCGCGCGCTGCGCTCGCAAAGACGATAGCCTAA

Protein sequence : 
MRACVRPRHCAMSKAMNEQQIVLAATSISKTFVQGGQPVPVLADAQLHVYRGEKLAIVGASGSGKSTLLHLLGGLDEPSA
GRVALLGRPFSHLAERERNDLRNRALGFVYQFHHLLPEFTALDNVAMPLRIRRMPVEGARREAMATLERVGIAHRAKHRP
GELSGGERQRVAIARALVTRPACVLADEPTGNLDGHTAETVFQLMLELSRTFETSFVIVTHDIELAARCDRVLRLRDGVL
HDETTVARAALAKTIA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-29 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-30 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-30 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-30 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RBRH_03840 YP_004029623.1 lipoprotein releasing system ATP-binding protein lolD NC_008702.1.4606598. Protein 4e-31 45
RBRH_03840 YP_004029623.1 lipoprotein releasing system ATP-binding protein lolD NC_012469.1.7686878. Protein 9e-37 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RBRH_03840 YP_004029623.1 lipoprotein releasing system ATP-binding protein lolD VFG2059 Protein 9e-10 42