Gene Information

Name : Calkro_0062 (Calkro_0062)
Accession : YP_004022797.1
Strain : Caldicellulosiruptor kronotskyensis 2002
Genome accession: NC_014720
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator, winged helix family
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 84038 - 84730 bp
Length : 693 bp
Strand : +
Note : KEGG: ate:Athe_0080 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; transcriptional regulator domain-containing prote

DNA sequence :
ATGTCCAAAGCACATATTCTTGTTGTAGACGATGAAAAACCAATTGTTGATATTATAAAGTTCAATTTAGAAAAAGAAGG
ATATAAGGTAACAGCGTCATATGACGGTGAGGATGCGTTAAATAGAATAAAAAATGAAAACTTTGACATGGTACTTCTGG
ATGTGATGCTTCCTAAACTTGACGGGTTTTCTGTATGCAAAAAGGTCCGTGAGTTTTCAGATGTCCCAATTATAATGATA
ACAGCAAAGGCTGATGAGGTTGACAAGGTTTTGGGGCTGGAGCTTGGGGCAGATGATTATATTACGAAACCGTTTGGTAT
AAGAGAGCTCATTGCCAGAATTAGAGCAAATTTAAGAAGGACAGCTCAAAGCGCAGCTCAAGATGGAAAGGTATTAAAAG
CTGGGAATTTGACTTTGAACCCTGAGACGTTTGAAGTAAAGAAAGACGGCAAAGTTATTGAACTTACCGTAAGAGAATAT
GAGCTTTTGAAGTTTTTGATGTCGCAAAAGGGTCAGGTATTTTCAAGAGAAGAGCTTTTGGAAAAGGTTTGGGACTATGA
ATATTATGGAGATGTTAGAACAGTAGATGTTACTGTAAGAAGATTGAGAGAAAAAATAGAAGATAATCCATCAGAACCGA
ATTTTATTCTTACAAAGAGAGGAATTGGCTACTACTTTAATCCCAATATTTAA

Protein sequence :
MSKAHILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKNENFDMVLLDVMLPKLDGFSVCKKVREFSDVPIIMI
TAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTAQSAAQDGKVLKAGNLTLNPETFEVKKDGKVIELTVREY
ELLKFLMSQKGQVFSREELLEKVWDYEYYGDVRTVDVTVRRLREKIEDNPSEPNFILTKRGIGYYFNPNI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 6e-37 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family NC_012469.1.7685629. Protein 4e-54 56
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family NC_002952.2859905.p0 Protein 2e-49 51
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family NC_007622.3794472.p0 Protein 2e-49 51
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family NC_007793.3914279.p0 Protein 2e-49 50
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family NC_002745.1124361.p0 Protein 2e-49 50
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family NC_009782.5559369.p0 Protein 2e-49 50
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family NC_002951.3237708.p0 Protein 2e-49 50
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family NC_003923.1003749.p0 Protein 2e-49 50
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family NC_002758.1121668.p0 Protein 2e-49 50
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family NC_009641.5332272.p0 Protein 2e-49 50
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family NC_013450.8614421.p0 Protein 2e-49 50
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family NC_012469.1.7686381. Protein 1e-43 48
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family HE999704.1.gene2815. Protein 6e-44 47
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family CP001918.1.gene5135. Protein 3e-24 47
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family HE999704.1.gene1528. Protein 2e-34 46
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family CP001138.1.gene4273. Protein 4e-28 46
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family NC_002695.1.915041.p Protein 9e-28 45
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family CP000034.1.gene3834. Protein 9e-28 45
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family AE016830.1.gene1681. Protein 1e-41 44
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family AE000516.2.gene3505. Protein 3e-35 44
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family BAC0533 Protein 5e-28 44
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family CP000647.1.gene4257. Protein 5e-28 44
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family CP004022.1.gene3215. Protein 4e-31 44
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family AF155139.2.orf0.gene Protein 2e-39 43
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family AM180355.1.gene1830. Protein 9e-37 43
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family DQ212986.1.gene4.p01 Protein 5e-37 43
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family NC_010079.5776364.p0 Protein 5e-39 43
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family NC_002952.2859858.p0 Protein 5e-39 43
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family NC_007622.3794948.p0 Protein 5e-39 43
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family NC_003923.1003417.p0 Protein 5e-39 43
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family NC_013450.8614146.p0 Protein 5e-39 43
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family NC_002951.3238224.p0 Protein 5e-39 43
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family NC_007793.3914065.p0 Protein 5e-39 43
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family NC_002758.1121390.p0 Protein 5e-39 43
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family EU250284.1.orf4.gene Protein 4e-34 42
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family CP000675.2.gene1535. Protein 9e-36 41
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family FJ349556.1.orf0.gene Protein 3e-37 41
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family BAC0308 Protein 7e-28 41
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family AE015929.1.gene1106. Protein 2e-31 41
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family CP001485.1.gene721.p Protein 1e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Calkro_0062 YP_004022797.1 two component transcriptional regulator, winged helix family VFG1563 Protein 3e-37 41