Gene Information

Name : Calkro_0196 (Calkro_0196)
Accession : YP_004022928.1
Strain : Caldicellulosiruptor kronotskyensis 2002
Genome accession: NC_014720
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 284994 - 285680 bp
Length : 687 bp
Strand : +
Note : KEGG: csc:Csac_0660 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence :
ATGATTGAACTTTACAATATTAGTAAAATCTACAAGATGGGTGATAATGAGGTATATGCTCTGAACGGTGTAACACTGAA
GATACAGAAAAACGAGTTTGTGGCAATTCTTGGTCCGTCAGGGTCAGGAAAGTCAACATTGATGAATATCATAGGCTGTC
TTGACACACCAACATCTGGCAGTTACATTTTAGATGGAAATGAGGTGAGTAAGTTGTCTGACAATCAGCTTGCGGAGATT
CGAAACAGCAAGATAGGGTTTGTATTTCAGCAGTTTAACTTAATTCCGCAGCTGACAGCACTTGAAAATGTTGAGCTTCC
TCTTATATACCAGGGAGTTTCCGCATCAAAACGCCACAAGCTTGCCAAAGAAGCTTTAGAAAAGGTTGGACTTGGAGACA
GGCTCCATCACAGACCAAGACAGCTCTCTGGAGGTCAGCAGCAAAGGGTGGCAATTGCAAGAGCGCTTGTTACAAGCCCG
AGCATAATCCTTGCAGATGAACCAACAGGAAACTTGGACTCAAAGTCTGGCAGTGAGATTATGCAAATTTTTAAACAACT
GCATTCTCAGGGAAGCACCATTGTTTTGATAACCCATGACAACAACATAGCATCGCAGGCAAAGAGGATTGTAAGAATTC
ATGATGGTCAAATAGTAGAAGATACATGTTTGACATATATTTTCTAA

Protein sequence :
MIELYNISKIYKMGDNEVYALNGVTLKIQKNEFVAILGPSGSGKSTLMNIIGCLDTPTSGSYILDGNEVSKLSDNQLAEI
RNSKIGFVFQQFNLIPQLTALENVELPLIYQGVSASKRHKLAKEALEKVGLGDRLHHRPRQLSGGQQQRVAIARALVTSP
SIILADEPTGNLDSKSGSEIMQIFKQLHSQGSTIVLITHDNNIASQAKRIVRIHDGQIVEDTCLTYIF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 6e-37 42
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 2e-36 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-34 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-35 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-35 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-35 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Calkro_0196 YP_004022928.1 ABC transporter-like protein NC_012469.1.7686878. Protein 2e-63 61
Calkro_0196 YP_004022928.1 ABC transporter-like protein CP001581.1.gene598.p Protein 1e-44 50
Calkro_0196 YP_004022928.1 ABC transporter-like protein CP001581.1.gene798.p Protein 5e-43 48
Calkro_0196 YP_004022928.1 ABC transporter-like protein NC_008702.1.4606598. Protein 1e-50 47
Calkro_0196 YP_004022928.1 ABC transporter-like protein NC_012469.1.7685735. Protein 1e-36 41