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Name : sctR (RBRH_03561) Accession : YP_004022632.1 Strain : Genome accession: NC_014718 Putative virulence/resistance : Virulence Product : type III secretion inner membrane protein SctR Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4790 EC number : - Position : 743322 - 744014 bp Length : 693 bp Strand : + Note : COG: Type III secretory pathway, component EscR DNA sequence : GTGATCATCTCGGCATCCGAATCCTCCAAATGGTGCAAGGCAATGCTCCAGCCCAGTGAACTGACGAGCTTGATGCTGAT TGTTCTTGCAATCAGCGTCGTCCCCCTCGTCGCCGTCGTCATCACGTCATATACAAAGATTGTCGTGGTACTCAGCCTGC TGCGCAACGCACTCGGCGCACAGCAAGTTCCACCGAACATGGTGCTAAACGGTATCGCCATCCTCGTTTCGCTCTACATC ATGGCGCCCATCGGCATGGCGGCAGCAAAACAACTGGAAAACCAGCCGAATGCCGGCACCCCCTCTCAGTCGGTCGTGCA AGCATTCAGTGCGGCGCAGGAGCCATTCCGTGCATTCCTAAAACAACATGCCAACAAAAGAGAAAAGCGCTTTTTCATGC GTACGGCGACTGTCATTTGGCCCAAGGAGGTGGCCGACGGCCTCCGTGAGGACGATTTCATCGTACTGGCGCCGGCATTC ACCTTATCCGAGCTCACCGACGCCTTCAAGATCGGATTTCTTCTCTACATCACCTTTGTGGTCATCGACCTGATCATCGC CAATGTGCTGCTCGCGATGGGTCTCAACCAGGTCATGCCAACCAACGTCGCAATACCCTTCAAGCTACTGCTGTTCGTCG TGATGGATGGCTGGTCAACGCTGATCCACGGATTGATTCTGACATATCGCTAA Protein sequence : MIISASESSKWCKAMLQPSELTSLMLIVLAISVVPLVAVVITSYTKIVVVLSLLRNALGAQQVPPNMVLNGIAILVSLYI MAPIGMAAAKQLENQPNAGTPSQSVVQAFSAAQEPFRAFLKQHANKREKRFFMRTATVIWPKEVADGLREDDFIVLAPAF TLSELTDAFKIGFLLYITFVVIDLIIANVLLAMGLNQVMPTNVAIPFKLLLFVVMDGWSTLIHGLILTYR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcR | AAP34349.1 | HrcR | Virulence | Hrp PAI | Protein | 6e-62 | 66 |
| hrcR | BAB07862.1 | HrcR | Virulence | Hrp PAI | Protein | 1e-61 | 65 |
| hrcR | NP_640757.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 9e-65 | 64 |
| hrcR | YP_362153.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 9e-65 | 64 |
| hrcR | AAD21321.1 | HrcR | Virulence | Hrp PAI | Protein | 6e-65 | 64 |
| XC_3016 | YP_244084.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 6e-64 | 63 |
| hrcR | NP_636600.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 6e-64 | 63 |
| hrcR | YP_198720.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 1e-65 | 60 |
| lscR | AAO18040.1 | LscR | Virulence | TTSS locus | Protein | 2e-47 | 51 |
| YPO0270 | YP_002345352.1 | type III secretion system protein | Virulence | Not named | Protein | 6e-40 | 44 |
| unnamed | AAL06354.1 | EscR | Virulence | LEE | Protein | 7e-37 | 42 |
| hrcR | ABA47279.1 | HrcR | Virulence | S-PAI | Protein | 1e-36 | 41 |
| hrcR | AAT96262.1 | HrcR | Virulence | S-PAI | Protein | 2e-35 | 41 |
| hrcR | AAT96303.1 | HrcR | Virulence | S-PAI | Protein | 2e-35 | 41 |
| hrcR | AAT96343.1 | HrcR | Virulence | S-PAI | Protein | 2e-35 | 41 |
| ssaR | CAA68199.1 | secretion system apparatus, SsaR | Virulence | SPI-2 | Protein | 2e-37 | 41 |
| yscR | NP_456109.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 4e-37 | 41 |
| yscR | NP_805090.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 4e-37 | 41 |
| ssaR | YP_216427.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 3e-37 | 41 |
| ssaR | NP_460384.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 3e-37 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| sctR | YP_004022632.1 | type III secretion inner membrane protein SctR | VFG0188 | Protein | 4e-50 | 52 |
| sctR | YP_004022632.1 | type III secretion inner membrane protein SctR | VFG0394 | Protein | 2e-50 | 49 |
| sctR | YP_004022632.1 | type III secretion inner membrane protein SctR | VFG0044 | Protein | 7e-46 | 47 |
| sctR | YP_004022632.1 | type III secretion inner membrane protein SctR | VFG0519 | Protein | 1e-37 | 41 |
