Gene Information

Name : RBRH_00404 (RBRH_00404)
Accession : YP_004022003.1
Strain :
Genome accession: NC_014718
Putative virulence/resistance : Virulence
Product : transcriptional regulatory protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 62758 - 63486 bp
Length : 729 bp
Strand : +
Note : Transcriptional regulatory protein; COG: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Pfam: Response regulator receiver domain::PF00072
Transcriptional regulatory protein, C terminal::PF00486

DNA sequence : 
ATGCCATTGAGCGGCTCCATCATGGTTTCACGCATTTTGCTGATCGAAGACGACAGTCGCCTGGCTGCGCTGGTGGCCAG
CTACCTGCGCAAGCACGACTATGACGTGCATATCGTGCTGCACGGCAACGACGCATTGGACGCGATTCTCGCGCGTCGGC
CCGACCTGGTGATTCTCGATGTGAACCTGCCCGGCAAGGACGGCTTCCAGATATGCCGCGAGGCGCGCAAACAGTTCGAT
GGGCTAATCATCATGGTGACGGCCCGGGATGAGGATCTCGACGAGGTGTTGGGACTAGAGCTCGGTGCCGATGACTATGT
GCACAAGCCGGTGGAGCCACGCGTGCTGCTTGCGCGGATCAAGGCGCTGCTGCGCCGCGGGCTGCAGCTCGGCGGCGAGA
CGAGTGTTGAGCCGGAGTGCCTCATCTTAGGCAAATTCGAGATTAACCGCGCCACGCGCAGCATTCGCCTGCCTGATGGC
AGCGTACCCGATCTCACCTCAGCCGAGTTCGACTTGCTATGGGCGCTGGTGCGCTGTGCCGGCGAGGTCGTGAGCCGCGA
CGACTTAATGCGTCAGCTGCGCGGCATCGGTTTTGACGGCGTGGATCGCACGGTCGACGGCTGTATTTCCAAGCTGCGGC
GCAAGCTGCACGACGATGCGGCCAACCCGCAACGGATCAAGACCGTGCGTGGCAGAGGATATCAATTCAGCAAGGTGGCA
TGGGAGTAA

Protein sequence : 
MPLSGSIMVSRILLIEDDSRLAALVASYLRKHDYDVHIVLHGNDALDAILARRPDLVILDVNLPGKDGFQICREARKQFD
GLIIMVTARDEDLDEVLGLELGADDYVHKPVEPRVLLARIKALLRRGLQLGGETSVEPECLILGKFEINRATRSIRLPDG
SVPDLTSAEFDLLWALVRCAGEVVSRDDLMRQLRGIGFDGVDRTVDGCISKLRRKLHDDAANPQRIKTVRGRGYQFSKVA
WE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 4e-23 41
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-22 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RBRH_00404 YP_004022003.1 transcriptional regulatory protein CP000034.1.gene3671. Protein 4e-34 45
RBRH_00404 YP_004022003.1 transcriptional regulatory protein NC_010410.6002989.p0 Protein 7e-27 41
RBRH_00404 YP_004022003.1 transcriptional regulatory protein NC_010400.5986590.p0 Protein 7e-27 41
RBRH_00404 YP_004022003.1 transcriptional regulatory protein NC_011595.7057856.p0 Protein 7e-27 41
RBRH_00404 YP_004022003.1 transcriptional regulatory protein CP001918.1.gene5135. Protein 3e-17 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RBRH_00404 YP_004022003.1 transcriptional regulatory protein VFG1563 Protein 2e-23 41
RBRH_00404 YP_004022003.1 transcriptional regulatory protein VFG1702 Protein 7e-23 41