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Name : RBRH_00395 (RBRH_00395) Accession : YP_004021995.1 Strain : Genome accession: NC_014718 Putative virulence/resistance : Unknown Product : sigma-54-dependent transcriptional activator Function : - COG functional category : K : Transcription COG ID : COG3829 EC number : - Position : 55052 - 57109 bp Length : 2058 bp Strand : + Note : Sigma-54-dependent transcriptional activator; COG: Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains; Pfam: Bacterial regulatory protein, Fis family::PF02954 Propionate catabolism activator::PF06506 Sigma-54 interact DNA sequence : GTGGCCCGAGTTTCAATATTGAAATCAGGCGTTTCGTTTATGAGATGCGACGCGCATAATGTGGTATCACCAATTTGCGG TATCACCAATTGGGGTAAATGGGCTTTGAGCATCGTACAACCAGACGCGGTCGCTCGCCCGCGTTTGTGGGCCATGGGAA TAAGTCGATTGCGTGACTTGTTCCTGGACATCGCCCGCGAGTATGACGGGCGTGCGCAACTGCGCGTGGTCTCGCGCGGT TTCGAAGACGCGGTGCATGAGATCAATGTGGCCGGCTCGATGCGTCCGGACGTGGTAGTGGCCGGTGGATCGAACGGCGC GTATTTGAAAGCGCGCGTGAACGTGCCGGTTGTGCTGATCCATCCCACCGGTTTCGACGTGATGCATGCGCTGGCGCAGG CACGGCGCGACGCGGCATTGGTCGCGCTGGTTACACACGGCGATATTCCTGACGAGGTCCGGCAGTTCACGCATGCCTAC GGCGTTGACGTGGTTCTCGGCTCGTATCGGTCGGTGCAGGATGCGCAGGCCTGCGTGCAGGACTTGCGTGAGCGTGGCGT TGGCGCGGTGGTCGGGCCCGGCCTGGTCGCGGATCTTGCCGCCCACGCCGGCATGCATGCGGTATTTCTGTACTCTCGCG CCTGCGTGCGTGCCGCTTTCGATACCGCGCTGGAAGTCGTGCAGGCCACGCGTGCCGAGGCACTGCGCCGCGCCCGGCTG GATAACCTGCTGCAGCACCTGCGCGACGGAGTGGTGGCGCTCGATGCCGAAGGACGCGTCGAGGCGATGAACCAACGACT GTCTGACGCGCTCGGTATCGGCGCCACGCAGGCGGCGGGGCGCACGCTGCTGGATTTGGCGCCGTGCCTGGCCGATTCGC TGCCCGACGCCGACGGCGATACGCTCAGCGTCATCCGTGGGGTGAGCTATGTCGTGCATCGCGGCCCGCTCGCCGGCCCC TGCGGCGAGCAGGGCGGCACCGTGCTGACGTTCCAAGAGTCGCGCGCGGTAGAGCGGCTGGATCGCACGTTGCGGTCACG GCCGCGTGCGCAGCAATTGACCGCCCGTTACGATCTGGACGACCTGGTCGGCGAATGCGCGCCCATCGAGCGCGTGCGCG TGCTGGTGCGTCGTTATGCACGCTCGGACGCGACCGTGCTCGTGCTCGGCGAAAGCGGCACCGGCAAGGAAATGGTCGCC CAGAGCATCCACCGCCTGAGTGCGCGGCGCGATTTCGCGTTCGTGGCTATCAACTGCGGTGCCTTTCCGGAGGCGCTGCT CGAAAGCGAACTGTTCGGCTACGAAGAGGGCGCCTTCACCGGCGCGCGCAGGGGGGGCAAGGTGGGCCTGATCGAAGCCG CGCATCGTGGCACTTTATTCCTGGACGAGATCGGCGAGATGTCGTTGCCGTTGCAAAGCCGTTTGCTGCGGGTGCTCCAG GAGCGCGAAGTGGTGCGTCTGGGTTCGACCGAGCCGGTGCGCGTCGATATCCGCGTGATCGCCGCCACGCACCGTGCGTT GATCGATGGCATCGAGTCGGGCACATTCCGCGCTGATCTTTATTATCGGCTGAATATCTTGAGCATTGCGCTGCCACCGT TGCGTGAGCGTCCTGGTGATGTGATGCTGCTCGCGGTGGAATGGCTGCTGCAGGCGGCGCGGCGCGAGCCCCGCCTGGCC GTGCGTGTGCCGGATACCAACGAGGCAACCCGAATACTGGCGCCGGTGGCCGCGCCGCTGTGCGCGTACCGATGGCCCGG CAACGTGCGCGAACTGCAGAACGTCATCGAGCGGATCGCGGTCGAATTAGCCGATACCGAGGCCGAGGACGATGTTGCGC TGACCGTGGCCGTGCTGCGCACGATCGCGCCCGAGTTGTTCGACACGCCGGCTGGTCCCGTCGTGCCCGCCTCGACGCTG CGTGAACGTAGCCGCCATGTCGAGGCGGACGAGATCCGTGCCGCGTTAAAGGCCCATGATGGTGATCGCGATGCAGCATG CCAGGCGTTGGGCATCAGCAAGACGACACTGTGGCGCAAACTCAATGCCGCGCGATAA Protein sequence : MARVSILKSGVSFMRCDAHNVVSPICGITNWGKWALSIVQPDAVARPRLWAMGISRLRDLFLDIAREYDGRAQLRVVSRG FEDAVHEINVAGSMRPDVVVAGGSNGAYLKARVNVPVVLIHPTGFDVMHALAQARRDAALVALVTHGDIPDEVRQFTHAY GVDVVLGSYRSVQDAQACVQDLRERGVGAVVGPGLVADLAAHAGMHAVFLYSRACVRAAFDTALEVVQATRAEALRRARL DNLLQHLRDGVVALDAEGRVEAMNQRLSDALGIGATQAAGRTLLDLAPCLADSLPDADGDTLSVIRGVSYVVHRGPLAGP CGEQGGTVLTFQESRAVERLDRTLRSRPRAQQLTARYDLDDLVGECAPIERVRVLVRRYARSDATVLVLGESGTGKEMVA QSIHRLSARRDFAFVAINCGAFPEALLESELFGYEEGAFTGARRGGKVGLIEAAHRGTLFLDEIGEMSLPLQSRLLRVLQ EREVVRLGSTEPVRVDIRVIAATHRALIDGIESGTFRADLYYRLNILSIALPPLRERPGDVMLLAVEWLLQAARREPRLA VRVPDTNEATRILAPVAAPLCAYRWPGNVRELQNVIERIAVELADTEAEDDVALTVAVLRTIAPELFDTPAGPVVPASTL RERSRHVEADEIRAALKAHDGDRDAACQALGISKTTLWRKLNAAR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAK01495.1 | propionate catabolism operon regulator prpR | Not tested | PAGI-1 | Protein | 2e-95 | 41 |
