Gene Information

Name : FraEuI1c_5905 (FraEuI1c_5905)
Accession : YP_004019759.1
Strain : Frankia sp. EuI1c
Genome accession: NC_014666
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 7265623 - 7266303 bp
Length : 681 bp
Strand : -
Note : KEGG: kfl:Kfla_0268 transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; transcriptional regulator domain-containing protein

DNA sequence : 
ATGACGAACCGGGTCCTGATCGCCGAGGACGAGCAGCGGATCGCGTCGTTCGTGGCGAAGGGGCTGCGGTCGAACGGCTT
CGTCCCGACCTGCGTCGCCGACGGCCAGTCGGCGCTGGAGGTCGCGCTGGCGGGCGACGTCGACCTGTTGCTGCTCGATC
TCGGCCTGCCCGACCTGGACGGGTTCGCCGTGCTGCGCCAGCTGCGGGCCGCGGGCTCGCGGCTGCCCGTCGTGGTGCTG
ACCGCCCGCGACGGGGTGCGTGACACGGTCGCCGCGCTGGAGGGCGGGGCCGACGACTACGTCAGCAAGCCCTTCCGGTT
CGAGGAGCTGCTCGCCCGTGTCCGGCTGCGGCTGCGGCCCGACCGAGGGGCCGCCCCGGAGCCGACCGTGCTGCGCAGCG
GTGATCTCGCCCTGGACCTGCGTACCCGCCAGGCGCGCGTCGGCGACCGAGTGATCGACCTGACCGCCCGGGAGTTCGTG
CTGGCCGAGACGTTCCTGCGCCACCCCGGCCAGGTGCTCGCCCGCGAGCAGCTGCTGTCCGCGGTCTGGGGCTACGACTA
CGACCCGGGCAGCAACATCGTCGACGTCTACGTCGGCTACCTGCGCCGCAAGCTCGGCGCGGCCAGGATCGCGACGGTCC
GCGGCATGGGCTACCGGCTGGAGACGGCCGTCAGGACGTGA

Protein sequence : 
MTNRVLIAEDEQRIASFVAKGLRSNGFVPTCVADGQSALEVALAGDVDLLLLDLGLPDLDGFAVLRQLRAAGSRLPVVVL
TARDGVRDTVAALEGGADDYVSKPFRFEELLARVRLRLRPDRGAAPEPTVLRSGDLALDLRTRQARVGDRVIDLTAREFV
LAETFLRHPGQVLAREQLLSAVWGYDYDPGSNIVDVYVGYLRRKLGAARIATVRGMGYRLETAVRT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-21 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-20 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FraEuI1c_5905 YP_004019759.1 transcriptional regulator BAC0197 Protein 5e-26 48
FraEuI1c_5905 YP_004019759.1 transcriptional regulator BAC0083 Protein 3e-26 46
FraEuI1c_5905 YP_004019759.1 transcriptional regulator BAC0638 Protein 1e-19 44
FraEuI1c_5905 YP_004019759.1 transcriptional regulator BAC0111 Protein 3e-24 43
FraEuI1c_5905 YP_004019759.1 transcriptional regulator NC_002516.2.879194.p Protein 2e-20 43
FraEuI1c_5905 YP_004019759.1 transcriptional regulator BAC0125 Protein 3e-22 42
FraEuI1c_5905 YP_004019759.1 transcriptional regulator BAC0308 Protein 2e-22 42
FraEuI1c_5905 YP_004019759.1 transcriptional regulator HE999704.1.gene1528. Protein 6e-24 42
FraEuI1c_5905 YP_004019759.1 transcriptional regulator BAC0347 Protein 3e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FraEuI1c_5905 YP_004019759.1 transcriptional regulator VFG1390 Protein 2e-29 46
FraEuI1c_5905 YP_004019759.1 transcriptional regulator VFG1389 Protein 2e-27 46
FraEuI1c_5905 YP_004019759.1 transcriptional regulator VFG0596 Protein 1e-21 42