Gene Information

Name : FraEuI1c_4657 (FraEuI1c_4657)
Accession : YP_004018519.1
Strain : Frankia sp. EuI1c
Genome accession: NC_014666
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 5707558 - 5708223 bp
Length : 666 bp
Strand : -
Note : KEGG: saq:Sare_4990 transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver

DNA sequence :
GTGCTGGTGGTCGAGGACGAGCCGCACATCAGCGACCTGATCCGGCTGTACCTGACCAGGGAGGGCTTCGGCGTCGAGGT
CCGCCAGGACGGCGCCGCCGGGCTCACGGCGGCCCGCGAGCTCGCGCCGGTCGCGCTCGTCCTCGACGTCCGGCTGCCCG
GCCTCGACGGGCGCGACGTGCTGCGCGCGCTGCGCGCCGAGGAGAACTGGACGCCGGTCCTGTTCGTGACCGCGCGCGAC
GACGAGGTCGACCGGATTCTCGGCCTGGAGCTCGGCGCCGACGACTACCTGGTCAAGCCGTTCTCCCCGCGCGAGCTGGT
CGCCCGGCTGCGGGCCGTACTGCGCCGCGCCGGTCCGCAGGCGGCTCAGCCGGCGACGCGGACCCTGCGGGCCGGCGCCG
TCGAGCTCGACCTCGACCGCCGCCAGGTGGCCGCCGCCGGGGTGCCGGTCGCGCTGACGGCCACCGAGTTCGACCTGCTC
GCCGCGCTGCTGGCCCGCCCGGGGCTGGTCTACACCCGGGAGCGGCTGCTCTCCCAGGTGTGGGGCTACCACGCCGCGGC
CGGGACCCGCACCGTCGACGTGCACGTCGCCCAGGTCCGCGCCAAGCTCGGCGACGTCTCCCCGATCCGGACCGTCCGCG
GCGTCGGGTACACCGCCGATGCCTGA

Protein sequence :
MLVVEDEPHISDLIRLYLTREGFGVEVRQDGAAGLTAARELAPVALVLDVRLPGLDGRDVLRALRAEENWTPVLFVTARD
DEVDRILGLELGADDYLVKPFSPRELVARLRAVLRRAGPQAAQPATRTLRAGAVELDLDRRQVAAAGVPVALTATEFDLL
AALLARPGLVYTRERLLSQVWGYHAAAGTRTVDVHVAQVRAKLGDVSPIRTVRGVGYTADA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-24 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-23 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FraEuI1c_4657 YP_004018519.1 transcriptional regulator AE000516.2.gene3505. Protein 1e-37 47
FraEuI1c_4657 YP_004018519.1 transcriptional regulator BAC0197 Protein 2e-27 44
FraEuI1c_4657 YP_004018519.1 transcriptional regulator BAC0638 Protein 2e-23 44
FraEuI1c_4657 YP_004018519.1 transcriptional regulator NC_012469.1.7686381. Protein 1e-33 43
FraEuI1c_4657 YP_004018519.1 transcriptional regulator NC_002952.2859905.p0 Protein 7e-33 43
FraEuI1c_4657 YP_004018519.1 transcriptional regulator NC_007793.3914279.p0 Protein 1e-32 43
FraEuI1c_4657 YP_004018519.1 transcriptional regulator NC_007622.3794472.p0 Protein 7e-33 43
FraEuI1c_4657 YP_004018519.1 transcriptional regulator NC_002745.1124361.p0 Protein 1e-32 43
FraEuI1c_4657 YP_004018519.1 transcriptional regulator NC_009782.5559369.p0 Protein 1e-32 43
FraEuI1c_4657 YP_004018519.1 transcriptional regulator NC_002951.3237708.p0 Protein 1e-32 43
FraEuI1c_4657 YP_004018519.1 transcriptional regulator NC_003923.1003749.p0 Protein 9e-33 43
FraEuI1c_4657 YP_004018519.1 transcriptional regulator NC_002758.1121668.p0 Protein 1e-32 43
FraEuI1c_4657 YP_004018519.1 transcriptional regulator NC_009641.5332272.p0 Protein 1e-32 43
FraEuI1c_4657 YP_004018519.1 transcriptional regulator NC_013450.8614421.p0 Protein 1e-32 43
FraEuI1c_4657 YP_004018519.1 transcriptional regulator CP000675.2.gene1535. Protein 6e-31 42
FraEuI1c_4657 YP_004018519.1 transcriptional regulator BAC0125 Protein 3e-29 42
FraEuI1c_4657 YP_004018519.1 transcriptional regulator BAC0308 Protein 2e-24 42
FraEuI1c_4657 YP_004018519.1 transcriptional regulator BAC0083 Protein 3e-28 42
FraEuI1c_4657 YP_004018519.1 transcriptional regulator AE016830.1.gene1681. Protein 6e-33 42
FraEuI1c_4657 YP_004018519.1 transcriptional regulator NC_012469.1.7685629. Protein 1e-28 41
FraEuI1c_4657 YP_004018519.1 transcriptional regulator HE999704.1.gene2815. Protein 1e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FraEuI1c_4657 YP_004018519.1 transcriptional regulator VFG1389 Protein 8e-26 48
FraEuI1c_4657 YP_004018519.1 transcriptional regulator VFG1386 Protein 2e-31 44
FraEuI1c_4657 YP_004018519.1 transcriptional regulator VFG0596 Protein 6e-25 42
FraEuI1c_4657 YP_004018519.1 transcriptional regulator VFG1390 Protein 3e-28 42