Gene Information

Name : FraEuI1c_4542 (FraEuI1c_4542)
Accession : YP_004018405.1
Strain : Frankia sp. EuI1c
Genome accession: NC_014666
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 5574509 - 5575369 bp
Length : 861 bp
Strand : +
Note : KEGG: cwo:Cwoe_2691 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGAGCCGGCTGCGCGCCGAGCGCCTGGAGCTGGGCTACGACCAGCGCAGCATCGTGCACGACCTGGACGTCACGATCCC
GGACCGGTCCTTCACGGTCATCGTCGGCGCCAACGGCTGCGGCAAGTCGACCCTGCTGCGCGGGCTCGCCCGGATGCTGA
CGCCGCGGGCCGGGCTGGTCCTGCTGGACGGCAAGCACATCCGGTCGCTGCCGTCCAAGGAGATCGCCCGGCGCCTCGGC
CTGCTGCCGCAGGGCCCGATCGCCCCGGACGGCATCACGGTCGCCGACCTGGTCGGCCGGGGCCGCTACCCGCACCAGGG
GCTGCTGCGGCAGTGGTCGGCGACGGACGAGCTGGCCGTGGTGGACGCGATGGCCGCCACCGGGATCACCGACCTGGCCG
ACGCCTACGTCGACGAGCTGTCCGGCGGCCAGCGCCAGCGGGCCTGGCTCGCCATGGCGCTGGCCCAGCAGACCCCGATC
ATGCTGCTGGACGAGCCCACGACCTTCCTCGACATCGCCCACCAGGTCGACGTCCTCGACCTGTGCGCCGACCTGCACCA
GTCCAGGGGGCACACGCTCGTGCTCGTCCTGCACGACCTCAACCAGGCCTGCCGCTACGCGACGCACCTGATCGCCATGC
GAGACGGGCGGATCGTCGCCGAGGGCCACCCGTCCGAGATCGTCACGGCCGACCTGGTCGAGCGGGTCTTCGGGCTGCGC
TGCCGCGTCATCACCGATCCCGAGTCGGGCACGCCGCTGGTCATCCCGGCCGCCCGCCGGACCGCGACCGGCCCATCGCC
CGCGCCCGTGTCACCCCCCGCGCCGGAGCCGCGCCGCGACGCCGCCGAGACCGCCTCATGA

Protein sequence : 
MSRLRAERLELGYDQRSIVHDLDVTIPDRSFTVIVGANGCGKSTLLRGLARMLTPRAGLVLLDGKHIRSLPSKEIARRLG
LLPQGPIAPDGITVADLVGRGRYPHQGLLRQWSATDELAVVDAMAATGITDLADAYVDELSGGQRQRAWLAMALAQQTPI
MLLDEPTTFLDIAHQVDVLDLCADLHQSRGHTLVLVLHDLNQACRYATHLIAMRDGRIVAEGHPSEIVTADLVERVFGLR
CRVITDPESGTPLVIPAARRTATGPSPAPVSPPAPEPRRDAAETAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 5e-64 52
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 1e-61 52
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-61 52
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-61 52
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 1e-61 52
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 6e-50 48
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 3e-62 46
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 3e-62 46
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 7e-52 46
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-50 41
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-50 41
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-50 41
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-50 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FraEuI1c_4542 YP_004018405.1 ABC transporter BAC0164 Protein 4e-50 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FraEuI1c_4542 YP_004018405.1 ABC transporter VFG0925 Protein 4e-82 62
FraEuI1c_4542 YP_004018405.1 ABC transporter VFG1042 Protein 3e-50 48