Gene Information

Name : FraEuI1c_4156 (FraEuI1c_4156)
Accession : YP_004018027.1
Strain : Frankia sp. EuI1c
Genome accession: NC_014666
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 5056214 - 5056915 bp
Length : 702 bp
Strand : -
Note : KEGG: sro:Sros_0132 response regulator receiver protein; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; transcriptional regulator domain-containing protein

DNA sequence : 
ATGGCGCGGGTGCTGATTGTCGACGACGATCCGACGGTCGCCGACGTGCTGAGCCGCTACCTGCAACGGGCCGGCTACGA
GGTCGACCTGGCCGCCGACGGCCACGCCGCCCTCGCCACCGCGGCCGCCACCCGGCCTGACCTGGTGGTCCTCGACCTGA
TGCTGCCCGGACTGAACGGCCTGGAGGTGTGCCGGCGGCTGCGGGAGACAGGGTCGGTTCCGGTGGTGATGCTGACCGCG
CTGGGCGCCGAGCATGACCGCATCGTCGGACTGGAGCACGGCGCGGACGACTACGTGACCAAGCCGTTCTCCCCCCGGGA
GCTCACGTTGCGGGTCCAGTCGGTGCTGCGCCGGGCCGCCGGGCCGCCCACCTCCACGGCCGGTGGAGTGATCGACGTCG
GCCCGTTCACCGTCGATCTCCCGGCCCGGGAGGTGCGGGGTGAGAACGGCACGATCTCGCTGACGGTCCGCGAGTTCGAC
CTGCTGGCCTACCTGGTCCGCCATCCGCGCCGGGCGTTCTCCCGGCCTGAGCTGATGGAGGCGGTCTGGGGCTGGTCCTA
CGGCGACCAGTCGACGGTCACCGTCCACATCCGCCGGCTGCGGGAGAAGCTGGAGGCCGATCCCTCGTCGCCGTCGATCC
TGGTGACCGTCTGGGGCGTCGGTTACCGCTACGAGCCGCCCGGTCCGGTGACGGCGGCGTGA

Protein sequence : 
MARVLIVDDDPTVADVLSRYLQRAGYEVDLAADGHAALATAAATRPDLVVLDLMLPGLNGLEVCRRLRETGSVPVVMLTA
LGAEHDRIVGLEHGADDYVTKPFSPRELTLRVQSVLRRAAGPPTSTAGGVIDVGPFTVDLPAREVRGENGTISLTVREFD
LLAYLVRHPRRAFSRPELMEAVWGWSYGDQSTVTVHIRRLREKLEADPSSPSILVTVWGVGYRYEPPGPVTAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 4e-36 43
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 5e-36 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FraEuI1c_4156 YP_004018027.1 transcriptional regulator AE000516.2.gene3505. Protein 8e-43 47
FraEuI1c_4156 YP_004018027.1 transcriptional regulator NC_012469.1.7685629. Protein 2e-41 44
FraEuI1c_4156 YP_004018027.1 transcriptional regulator CP000034.1.gene3671. Protein 1e-44 44
FraEuI1c_4156 YP_004018027.1 transcriptional regulator AE016830.1.gene1681. Protein 8e-41 42
FraEuI1c_4156 YP_004018027.1 transcriptional regulator NC_002952.2859905.p0 Protein 1e-40 42
FraEuI1c_4156 YP_004018027.1 transcriptional regulator NC_013450.8614421.p0 Protein 1e-40 42
FraEuI1c_4156 YP_004018027.1 transcriptional regulator NC_007793.3914279.p0 Protein 1e-40 42
FraEuI1c_4156 YP_004018027.1 transcriptional regulator NC_002745.1124361.p0 Protein 1e-40 42
FraEuI1c_4156 YP_004018027.1 transcriptional regulator NC_009782.5559369.p0 Protein 1e-40 42
FraEuI1c_4156 YP_004018027.1 transcriptional regulator NC_002951.3237708.p0 Protein 1e-40 42
FraEuI1c_4156 YP_004018027.1 transcriptional regulator NC_007622.3794472.p0 Protein 1e-40 42
FraEuI1c_4156 YP_004018027.1 transcriptional regulator NC_002758.1121668.p0 Protein 1e-40 42
FraEuI1c_4156 YP_004018027.1 transcriptional regulator NC_003923.1003749.p0 Protein 1e-40 42
FraEuI1c_4156 YP_004018027.1 transcriptional regulator NC_009641.5332272.p0 Protein 1e-40 42
FraEuI1c_4156 YP_004018027.1 transcriptional regulator NC_012469.1.7686381. Protein 4e-40 42
FraEuI1c_4156 YP_004018027.1 transcriptional regulator CP000647.1.gene2531. Protein 3e-32 42
FraEuI1c_4156 YP_004018027.1 transcriptional regulator CP000675.2.gene1535. Protein 7e-36 41
FraEuI1c_4156 YP_004018027.1 transcriptional regulator HE999704.1.gene2815. Protein 2e-42 41
FraEuI1c_4156 YP_004018027.1 transcriptional regulator CP001918.1.gene3444. Protein 2e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FraEuI1c_4156 YP_004018027.1 transcriptional regulator VFG1389 Protein 3e-32 45
FraEuI1c_4156 YP_004018027.1 transcriptional regulator VFG1390 Protein 4e-34 44
FraEuI1c_4156 YP_004018027.1 transcriptional regulator VFG1563 Protein 2e-36 43
FraEuI1c_4156 YP_004018027.1 transcriptional regulator VFG1702 Protein 2e-36 43