Gene Information

Name : FraEuI1c_4085 (FraEuI1c_4085)
Accession : YP_004017956.1
Strain : Frankia sp. EuI1c
Genome accession: NC_014666
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4977627 - 4978373 bp
Length : 747 bp
Strand : +
Note : KEGG: ace:Acel_1449 transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver

DNA sequence :
GTGACCGGTCCTCCGGTCCGGGGGGCATGGCGGGTGAGCCGGCCCGCGGGCCAGAATGGGCGGATGTCATCTCCCGCGGT
CATGGTCGTCGAGGACGACGTGAACGTCTCGTATGTGGTCGCGACGGCGCTACGGCTGGCGGCCTTCGAGGTGGTGGAGG
TCTCGACGGGGCGTGAGGCGCTGCGCGTCGCGGGCGGTGACGCTCCGCCAAGTCTTGTCGTGATGGACGTGATGTTGCCC
GACCTCGACGGGTTCGAGGTCTGCCACAGGCTGCAGGCCTGCGGCTCGGACGTGCCGGTCCTGTTCCTGTCCGCTCGGGG
CAACCTCGACGACCGGTTGCGGGGCCTGTCCGCGGGCGCGGATGACTACCTGGCCAAACCGTTCAGCGTTGAGGAACTGG
TGGCGCGGATCAGGGTCATCCTGCGGCGCCGCGGGGTGCTGACGGAGGCCTCCGCGTTGACCTGCGGTGCCCTGCGCCTC
GACGAGGATGCCCGCCGCGTGACCGTCGGGGGCCGCACCATCGCGCTGTCACCCACTGAGTACAAGCTTCTGCGATTCCT
GTTACGCAACGCGGGCCGGGCGGTAAGCCGTGCGCAGATCCTCGACCACGTGTGGGACTACGGCTTCGATGGTGAGTCGA
CGGTCGTGGAGACGTTTATCTCCTCCCTGCGGAAGAAGGTCGACACGGCCCCGCCGACGCTTATCCACACCGTCCGGGGC
GTTGGCTACCGCCTCAGCGAGGAATGA

Protein sequence :
MTGPPVRGAWRVSRPAGQNGRMSSPAVMVVEDDVNVSYVVATALRLAAFEVVEVSTGREALRVAGGDAPPSLVVMDVMLP
DLDGFEVCHRLQACGSDVPVLFLSARGNLDDRLRGLSAGADDYLAKPFSVEELVARIRVILRRRGVLTEASALTCGALRL
DEDARRVTVGGRTIALSPTEYKLLRFLLRNAGRAVSRAQILDHVWDYGFDGESTVVETFISSLRKKVDTAPPTLIHTVRG
VGYRLSEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FraEuI1c_4085 YP_004017956.1 transcriptional regulator BAC0083 Protein 7e-34 46
FraEuI1c_4085 YP_004017956.1 transcriptional regulator BAC0197 Protein 2e-28 46
FraEuI1c_4085 YP_004017956.1 transcriptional regulator BAC0638 Protein 2e-26 43
FraEuI1c_4085 YP_004017956.1 transcriptional regulator BAC0125 Protein 7e-27 41
FraEuI1c_4085 YP_004017956.1 transcriptional regulator NC_002952.2859905.p0 Protein 2e-30 41
FraEuI1c_4085 YP_004017956.1 transcriptional regulator NC_003923.1003749.p0 Protein 1e-30 41
FraEuI1c_4085 YP_004017956.1 transcriptional regulator NC_002745.1124361.p0 Protein 1e-30 41
FraEuI1c_4085 YP_004017956.1 transcriptional regulator NC_009782.5559369.p0 Protein 1e-30 41
FraEuI1c_4085 YP_004017956.1 transcriptional regulator NC_002951.3237708.p0 Protein 1e-30 41
FraEuI1c_4085 YP_004017956.1 transcriptional regulator NC_007622.3794472.p0 Protein 2e-30 41
FraEuI1c_4085 YP_004017956.1 transcriptional regulator NC_002758.1121668.p0 Protein 1e-30 41
FraEuI1c_4085 YP_004017956.1 transcriptional regulator NC_009641.5332272.p0 Protein 1e-30 41
FraEuI1c_4085 YP_004017956.1 transcriptional regulator NC_013450.8614421.p0 Protein 1e-30 41
FraEuI1c_4085 YP_004017956.1 transcriptional regulator NC_007793.3914279.p0 Protein 1e-30 41
FraEuI1c_4085 YP_004017956.1 transcriptional regulator AE015929.1.gene1106. Protein 1e-22 41
FraEuI1c_4085 YP_004017956.1 transcriptional regulator NC_007793.3914065.p0 Protein 3e-26 41
FraEuI1c_4085 YP_004017956.1 transcriptional regulator NC_002758.1121390.p0 Protein 3e-26 41
FraEuI1c_4085 YP_004017956.1 transcriptional regulator NC_010079.5776364.p0 Protein 3e-26 41
FraEuI1c_4085 YP_004017956.1 transcriptional regulator NC_002952.2859858.p0 Protein 3e-26 41
FraEuI1c_4085 YP_004017956.1 transcriptional regulator NC_007622.3794948.p0 Protein 3e-26 41
FraEuI1c_4085 YP_004017956.1 transcriptional regulator NC_003923.1003417.p0 Protein 3e-26 41
FraEuI1c_4085 YP_004017956.1 transcriptional regulator NC_013450.8614146.p0 Protein 3e-26 41
FraEuI1c_4085 YP_004017956.1 transcriptional regulator NC_002951.3238224.p0 Protein 3e-26 41
FraEuI1c_4085 YP_004017956.1 transcriptional regulator BAC0111 Protein 2e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FraEuI1c_4085 YP_004017956.1 transcriptional regulator VFG1386 Protein 4e-40 48
FraEuI1c_4085 YP_004017956.1 transcriptional regulator VFG1389 Protein 2e-33 44
FraEuI1c_4085 YP_004017956.1 transcriptional regulator VFG0473 Protein 2e-19 42
FraEuI1c_4085 YP_004017956.1 transcriptional regulator VFG1390 Protein 7e-36 41
FraEuI1c_4085 YP_004017956.1 transcriptional regulator VFG0596 Protein 1e-26 41