Gene Information

Name : FraEuI1c_4040 (FraEuI1c_4040)
Accession : YP_004017911.1
Strain : Frankia sp. EuI1c
Genome accession: NC_014666
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4923270 - 4924190 bp
Length : 921 bp
Strand : +
Note : KEGG: ace:Acel_1449 transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver

DNA sequence : 
GTGACCCGGAGCTGGCGCTGCCCCGGGCGCCTCTCACCGACGCGCGGGCAGTGGGCGGCGCTCTCGCCCGCGGCCGAGCG
CCCGGCGCCGGAGCCCGCGGTCGGCGGGCTGGGCCAGGTCAACGAGTCGCTCACCTGGACAGGTAACACTGGGTGGGTGA
TGGCGCGAGTGAACCCGTCGACGGGTGATCTGCCGGTGACCCCGGATTCGACCGTGGACGTGGGGAAATCGCGGGTCCGG
GTCCTGGTGGTGGACGACGAGGAGGCCATTACCGACCTCGTCGCGATGGCGCTGCGCTATGAGGGTTTCGAGGTCGAGAC
GGTGCGCTCCGGGCAGGCGGCGCTGACCAGGGTCGCGCTCGACCCGCCAGACCTCCTGGTCCTGGACGTGATGCTCGGTG
ACATCGACGGGTTCGCGGTGTGCGAGCGGCTGCGCGGCGCCGGTCACGGCGTCCCGACGCTGTTCCTGACCGCGCGGGAC
ACGACCCAGGACAAGGTGCGCGGCCTGACCCTCGGCGGCGACGACTACGTGACCAAGCCGTTCTCCGTCTCCGAGCTGGT
CGCACGGGTCCGCGCCATCCTGCGGCGCGCCGGTTCACCGGTGACCGGTGACGGCCATCCGGCCCCGCTGCGGTTCGCCG
ACCTGGAACTCGATCCGAGGACCCGGGAGGTCCGCCGCGCGGGCCGTCTTGTCGAGCTCACGGCCACCGAGTACCGGCTG
CTCCAGTTCCTGCTGGCCAACGCCCGCGCCGTCCTGACGAGGGCCCAGCTCCTCGACCACGTCTGGGGACACGACTTCAG
CGGGGAAGGAGGGGTGCTGGAGACCTACATCAGCTATCTCCGCCGGAAGGTCGACAACGTCGAGCCGCCGCTGATCCACA
CCGTCCGTGGAGTCGGCTACGTCCTGCGCCTGCCCCGCTGA

Protein sequence : 
MTRSWRCPGRLSPTRGQWAALSPAAERPAPEPAVGGLGQVNESLTWTGNTGWVMARVNPSTGDLPVTPDSTVDVGKSRVR
VLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGDIDGFAVCERLRGAGHGVPTLFLTARD
TTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRAGSPVTGDGHPAPLRFADLELDPRTREVRRAGRLVELTATEYRL
LQFLLANARAVLTRAQLLDHVWGHDFSGEGGVLETYISYLRRKVDNVEPPLIHTVRGVGYVLRLPR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CDB402_0209 YP_005126722.1 two-component system response regulator Not tested Not named Protein 1e-19 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FraEuI1c_4040 YP_004017911.1 transcriptional regulator BAC0197 Protein 5e-26 46
FraEuI1c_4040 YP_004017911.1 transcriptional regulator BAC0638 Protein 3e-22 43
FraEuI1c_4040 YP_004017911.1 transcriptional regulator NC_012469.1.7685629. Protein 1e-23 42
FraEuI1c_4040 YP_004017911.1 transcriptional regulator NC_002952.2859905.p0 Protein 2e-26 42
FraEuI1c_4040 YP_004017911.1 transcriptional regulator NC_002758.1121668.p0 Protein 2e-26 42
FraEuI1c_4040 YP_004017911.1 transcriptional regulator NC_009641.5332272.p0 Protein 2e-26 42
FraEuI1c_4040 YP_004017911.1 transcriptional regulator NC_013450.8614421.p0 Protein 2e-26 42
FraEuI1c_4040 YP_004017911.1 transcriptional regulator NC_007793.3914279.p0 Protein 2e-26 42
FraEuI1c_4040 YP_004017911.1 transcriptional regulator NC_007622.3794472.p0 Protein 2e-26 42
FraEuI1c_4040 YP_004017911.1 transcriptional regulator NC_002745.1124361.p0 Protein 2e-26 42
FraEuI1c_4040 YP_004017911.1 transcriptional regulator HE999704.1.gene2815. Protein 2e-23 42
FraEuI1c_4040 YP_004017911.1 transcriptional regulator NC_009782.5559369.p0 Protein 2e-26 42
FraEuI1c_4040 YP_004017911.1 transcriptional regulator NC_002951.3237708.p0 Protein 2e-26 42
FraEuI1c_4040 YP_004017911.1 transcriptional regulator NC_003923.1003749.p0 Protein 2e-26 42
FraEuI1c_4040 YP_004017911.1 transcriptional regulator BAC0125 Protein 2e-24 41
FraEuI1c_4040 YP_004017911.1 transcriptional regulator BAC0308 Protein 2e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FraEuI1c_4040 YP_004017911.1 transcriptional regulator VFG1386 Protein 7e-48 53
FraEuI1c_4040 YP_004017911.1 transcriptional regulator VFG1390 Protein 2e-42 51