Gene Information

Name : FraEuI1c_4016 (FraEuI1c_4016)
Accession : YP_004017890.1
Strain : Frankia sp. EuI1c
Genome accession: NC_014666
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4888472 - 4889161 bp
Length : 690 bp
Strand : -
Note : KEGG: sro:Sros_3423 response regulator receiver protein; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver

DNA sequence : 
GTGGGGGTGGCGAGTGTGCGGGTGCTCGTGGTCGAGGACGAGCGACGACTGGCGGTCGCGCTCGGGCGCTGGCTGACCCG
GGACGGTTTCGCGGTCGACCTGGCCCACGACGGAGCCGAAGGCCTGTGGCGCGCGGAGCACGGCAGCTACGACGCGATGG
TGCTCGACATCCTGCTCCCGGGCCTGTCCGGGTACGAGGTCGTGCGCCGGCTGCGGCAAGCCGAGATCTGGCTGCCGGTA
CTGATGCTGACGGCCAAGGACGGGGAGTACGACATCGCCGACGCGCTGGACCTCGGAGCGGACGACTACCTGGTGAAGCC
CTTCTCCCTCGTCGTGCTTCTCGCCCGCCTGCGTGCGCTGCTGCGACGAGGTGCCACCGAACGGCCCCCGCTTCTCCACG
CGGCCGGGCTGACGCTGGATCCGGCGGCCCGACGCTGCCGGCGCGGCGAGGACGACATCGCGCTCACCTCCCGCGAGTTC
GCCGTCCTGGAGTACCTGGTCCGCCACCAAGGCCGCGTGATCAGCAAGTCCGAACTGCTTGACCATGTCTGGGACGAACA
CTTTGACGGCGACCCCAACATCGTCGAGGTCTACATCGGCTACCTCCGCCGAAAGATCGATAGACCGTTTCAGGCGCGGT
CGATCCTGACCATCCGAGGATCGGGCTACCTGGTCCCCGCGGATGACTGA

Protein sequence : 
MGVASVRVLVVEDERRLAVALGRWLTRDGFAVDLAHDGAEGLWRAEHGSYDAMVLDILLPGLSGYEVVRRLRQAEIWLPV
LMLTAKDGEYDIADALDLGADDYLVKPFSLVVLLARLRALLRRGATERPPLLHAAGLTLDPAARRCRRGEDDIALTSREF
AVLEYLVRHQGRVISKSELLDHVWDEHFDGDPNIVEVYIGYLRRKIDRPFQARSILTIRGSGYLVPADD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 8e-20 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-19 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FraEuI1c_4016 YP_004017890.1 transcriptional regulator BAC0083 Protein 5e-27 49
FraEuI1c_4016 YP_004017890.1 transcriptional regulator BAC0638 Protein 4e-18 46
FraEuI1c_4016 YP_004017890.1 transcriptional regulator BAC0111 Protein 7e-27 45
FraEuI1c_4016 YP_004017890.1 transcriptional regulator BAC0197 Protein 8e-24 44
FraEuI1c_4016 YP_004017890.1 transcriptional regulator Y16952.3.orf35.gene. Protein 7e-15 44
FraEuI1c_4016 YP_004017890.1 transcriptional regulator U82965.2.orf14.gene. Protein 1e-14 44
FraEuI1c_4016 YP_004017890.1 transcriptional regulator BAC0347 Protein 9e-21 43
FraEuI1c_4016 YP_004017890.1 transcriptional regulator BAC0125 Protein 5e-26 43
FraEuI1c_4016 YP_004017890.1 transcriptional regulator BAC0308 Protein 3e-21 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FraEuI1c_4016 YP_004017890.1 transcriptional regulator VFG1390 Protein 1e-26 46
FraEuI1c_4016 YP_004017890.1 transcriptional regulator VFG1389 Protein 3e-23 43
FraEuI1c_4016 YP_004017890.1 transcriptional regulator VFG1386 Protein 1e-23 43
FraEuI1c_4016 YP_004017890.1 transcriptional regulator VFG0596 Protein 3e-20 42