Gene Information

Name : FraEuI1c_3975 (FraEuI1c_3975)
Accession : YP_004017851.1
Strain : Frankia sp. EuI1c
Genome accession: NC_014666
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4846099 - 4846788 bp
Length : 690 bp
Strand : -
Note : KEGG: fal:FRAAL3821 response regulator in two-component regulatory system; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; transcriptional regulator domain-containing protein

DNA sequence :
ATGCGGGTGCTGGTGGTCGAGGACGAGCCGCGCACGGCCGCGCTGCTGCGGCGCGGGCTGGCCGAGGAGGGTTTCGCCGT
CGACGTCGTGGCGGACGGCGGCGACGCGGTGTGGCAGGCCAGCGAGATCACCTACGACGTGATCGTTCTGGACCTGATGC
TGCCGGTGCTCGACGGGTTCGAGGTCTGCCGGCGCCTGCGGGCGGCCGAGCGCTGGGCGCCGGTGCTCATGCTCTCGGCC
CGGGGCGAGGTCGTCGACCGGGTGCGGGGCCTCGACGTCGGAGCCGACGACTACCTGGGCAAACCGTTCAGCTTCGACGA
GCTGTCGGCCCGGCTGCGGGCGCTGATCCGCCGCGGCGCGCAGGAACGGCCGGTCGTGCTGGACATCGACGGGCTGCGCC
TGGACCCGACGGTCCGGGCCGCGAGCCGCGACGGCGTCGAGCTGGACCTGTCCCCGAAGGAGTTCGCCCTCCTGGAGTAC
CTGATGCGTCATCCCGGCCAGGTCCTCAGCCGCACGACCATCCTCGACCACGTGTGGGACCTGGCGTACGACCGGAACTC
CAACGTGGTCGACCAGTACGTCGCCTACCTGCGCCGCAAGATCGACAAGCCGTTCGGGGTCGCGCAGCTGGAGACCGTGC
GCGGTGCCGGCTACCGGCTGCGGGTCAACGCCGACGCGGCGGAGGACTGA

Protein sequence :
MRVLVVEDEPRTAALLRRGLAEEGFAVDVVADGGDAVWQASEITYDVIVLDLMLPVLDGFEVCRRLRAAERWAPVLMLSA
RGEVVDRVRGLDVGADDYLGKPFSFDELSARLRALIRRGAQERPVVLDIDGLRLDPTVRAASRDGVELDLSPKEFALLEY
LMRHPGQVLSRTTILDHVWDLAYDRNSNVVDQYVAYLRRKIDKPFGVAQLETVRGAGYRLRVNADAAED

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-34 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-34 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FraEuI1c_3975 YP_004017851.1 transcriptional regulator BAC0083 Protein 2e-43 50
FraEuI1c_3975 YP_004017851.1 transcriptional regulator BAC0197 Protein 2e-42 50
FraEuI1c_3975 YP_004017851.1 transcriptional regulator BAC0125 Protein 6e-40 50
FraEuI1c_3975 YP_004017851.1 transcriptional regulator BAC0638 Protein 1e-33 46
FraEuI1c_3975 YP_004017851.1 transcriptional regulator BAC0111 Protein 8e-42 44
FraEuI1c_3975 YP_004017851.1 transcriptional regulator BAC0308 Protein 1e-38 44
FraEuI1c_3975 YP_004017851.1 transcriptional regulator HE999704.1.gene1528. Protein 9e-30 44
FraEuI1c_3975 YP_004017851.1 transcriptional regulator Y16952.3.orf35.gene. Protein 1e-23 43
FraEuI1c_3975 YP_004017851.1 transcriptional regulator BAC0347 Protein 2e-36 43
FraEuI1c_3975 YP_004017851.1 transcriptional regulator U82965.2.orf14.gene. Protein 4e-25 43
FraEuI1c_3975 YP_004017851.1 transcriptional regulator AE015929.1.gene1106. Protein 1e-30 42
FraEuI1c_3975 YP_004017851.1 transcriptional regulator CP001485.1.gene721.p Protein 2e-24 42
FraEuI1c_3975 YP_004017851.1 transcriptional regulator NC_003923.1003417.p0 Protein 6e-35 41
FraEuI1c_3975 YP_004017851.1 transcriptional regulator NC_013450.8614146.p0 Protein 6e-35 41
FraEuI1c_3975 YP_004017851.1 transcriptional regulator NC_002951.3238224.p0 Protein 6e-35 41
FraEuI1c_3975 YP_004017851.1 transcriptional regulator NC_007793.3914065.p0 Protein 6e-35 41
FraEuI1c_3975 YP_004017851.1 transcriptional regulator NC_002758.1121390.p0 Protein 6e-35 41
FraEuI1c_3975 YP_004017851.1 transcriptional regulator NC_010079.5776364.p0 Protein 6e-35 41
FraEuI1c_3975 YP_004017851.1 transcriptional regulator NC_002952.2859858.p0 Protein 6e-35 41
FraEuI1c_3975 YP_004017851.1 transcriptional regulator NC_007622.3794948.p0 Protein 6e-35 41
FraEuI1c_3975 YP_004017851.1 transcriptional regulator AE000516.2.gene3505. Protein 2e-27 41
FraEuI1c_3975 YP_004017851.1 transcriptional regulator BAC0487 Protein 2e-20 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FraEuI1c_3975 YP_004017851.1 transcriptional regulator VFG1386 Protein 2e-36 45
FraEuI1c_3975 YP_004017851.1 transcriptional regulator VFG1389 Protein 1e-33 45
FraEuI1c_3975 YP_004017851.1 transcriptional regulator VFG0596 Protein 7e-35 44
FraEuI1c_3975 YP_004017851.1 transcriptional regulator VFG1390 Protein 5e-38 44
FraEuI1c_3975 YP_004017851.1 transcriptional regulator VFG0473 Protein 2e-25 41