Gene Information

Name : FraEuI1c_3934 (FraEuI1c_3934)
Accession : YP_004017810.1
Strain : Frankia sp. EuI1c
Genome accession: NC_014666
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 4802190 - 4802960 bp
Length : 771 bp
Strand : -
Note : KEGG: cai:Caci_4805 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
GTGACCACGACCTCGATGGACGCCGTCCCGGCGGATGCCGTCCCGACCGCGCCCGTCCTCGAGCTGCGCGCCGTGACCAA
GGTGTACGGCTCGGGGCCGACCGAGGTCCACGCGCTGGCGGGCGTCGACCTGTCGGTCCGGGCCGGCGAGATGGTCGCGA
TCATGGGCCCCAGCGGCTCCGGCAAGTCCACCCTGCTGACCATCGCGGGCAGTCTGGAGCAGCCGACCAGCGGCGACGTC
CTGGTCGAGGGCACCTCGCTGGCCGGCATGTCGGCCGCCGACCGGGCCCGGATGCGACGACGCCACATCGGCTACGTCTT
CCAGGACTTCAACCTGCTGCCCGGGCTCACCGCCGCCGAGAACATCTCGCTGCCGCTGGAGCTCGACGGCCTGAAGGCCA
GGAAGGCCGCCGAGTCGGCGCGCCGGGCCCTCGACGGGCTCGGCCTGGCGGACCGGGCGGACAGCTTCCCCGACGAGCTG
TCCGGTGGGCAGCGCCAGCGGGTCGCCATCGCCCGTGCACTGGTCGGCCAGCGCCGGCTGCTGCTGGCCGACGAGCCGAG
CGGTTCGCTGGACTCCCAGGCCGGCGAGAACGTCATGCGGCTGCTGCGCAGCGCCTGCAAGGAGGGCGCGGCGGCCGTGC
TGGCGACCCACGACGCCCAGCTCGCCGCGTGGGCCGACCGGGTCGTGTTCGTCCGGGACGGCGTGGCCGTGGACCAGGCC
GGCCCGGCCGCCGGCCCCGAGTCGCTGCTCACGGCGGACGTGCCGCGGTGA

Protein sequence : 
MTTTSMDAVPADAVPTAPVLELRAVTKVYGSGPTEVHALAGVDLSVRAGEMVAIMGPSGSGKSTLLTIAGSLEQPTSGDV
LVEGTSLAGMSAADRARMRRRHIGYVFQDFNLLPGLTAAENISLPLELDGLKARKAAESARRALDGLGLADRADSFPDEL
SGGQRQRVAIARALVGQRRLLLADEPSGSLDSQAGENVMRLLRSACKEGAAAVLATHDAQLAAWADRVVFVRDGVAVDQA
GPAAGPESLLTADVPR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-34 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-34 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-34 43
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-33 43
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 1e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FraEuI1c_3934 YP_004017810.1 ABC transporter NC_008702.1.4606598. Protein 2e-38 50
FraEuI1c_3934 YP_004017810.1 ABC transporter NC_012469.1.7686878. Protein 3e-44 44
FraEuI1c_3934 YP_004017810.1 ABC transporter CP001581.1.gene598.p Protein 1e-37 44
FraEuI1c_3934 YP_004017810.1 ABC transporter CP001581.1.gene798.p Protein 5e-39 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FraEuI1c_3934 YP_004017810.1 ABC transporter VFG2059 Protein 1e-15 41