Gene Information

Name : FraEuI1c_2400 (FraEuI1c_2400)
Accession : YP_004016309.1
Strain : Frankia sp. EuI1c
Genome accession: NC_014666
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2948572 - 2949249 bp
Length : 678 bp
Strand : +
Note : KEGG: sna:Snas_5642 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGATCGAGATCCATGAGGTGAGCAAGCGGTACGACGCCGGGCCGCCGGCCCTGGTCGACCTGTCGCTGAATGTGCGGGC
CGGGGAGACGCTGGCCGTGCTCGGCCCGTCCGGCAGCGGCAAGTCGACGCTGCTGAACATCATCGCGGGGCTCGACCGCC
CCAGCGCCGGCAGCGTCGTCGTCGACGGAGTCCGGGTCGACTCCTTGGGCGAGGCCGCCTCGGCGCGGTACCGGCGAGCC
AAGATCGGCCTGGTCTTCCAGTTCTTCAACCTGCTCGACGACCTGACCGTCGTCGACAACGTCCTGCTGCCGGCCCAGCT
CGCCGGGATGCCGCGGGCGAAGGCGCGCGCCCGGGCGGGCGAGCTGCTCGACCATCTCGGCATCGGCCGGCTGGCCCGGG
CCTATCCCGGCCGGCTCTCCGGTGGAGAGCGGCAGCGGGTCGCGGTCGCCCGGGCGCTGGTGAACCGGCCGGCCCTGCTG
CTGGCCGACGAGCCGACCGGCGCGCTGGACAGCGCCTCGGGCGCGCAGGTCAGGGAGCTGCTGGTCCGGCTGCGCGAGGA
TGGCCAGACGATCCTGCTGGTCACCCACGACGTGGCGCTCGCCGAGGCCTGCGCGAGCCGGACCATCGAGCTGGTGGACG
GCGCGATCACCCGGGATGCCACGGCGGTGGCCCGATGA

Protein sequence : 
MIEIHEVSKRYDAGPPALVDLSLNVRAGETLAVLGPSGSGKSTLLNIIAGLDRPSAGSVVVDGVRVDSLGEAASARYRRA
KIGLVFQFFNLLDDLTVVDNVLLPAQLAGMPRAKARARAGELLDHLGIGRLARAYPGRLSGGERQRVAVARALVNRPALL
LADEPTGALDSASGAQVRELLVRLREDGQTILLVTHDVALAEACASRTIELVDGAITRDATAVAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABA47263.1 ABC transporter Not tested S-PAI Protein 2e-15 45
opuBA YP_005124363.1 choline transport system ATP-binding protein Not tested Not named Protein 9e-16 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FraEuI1c_2400 YP_004016309.1 ABC transporter NC_008702.1.4606598. Protein 3e-25 47
FraEuI1c_2400 YP_004016309.1 ABC transporter NC_012469.1.7686878. Protein 5e-32 44
FraEuI1c_2400 YP_004016309.1 ABC transporter CP001581.1.gene798.p Protein 5e-25 42