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Name : Rvan_0399 (Rvan_0399) Accession : YP_004010784.1 Strain : Rhodomicrobium vannielii ATCC 17100 Genome accession: NC_014664 Putative virulence/resistance : Virulence Product : nucleotide sugar dehydrogenase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0677 EC number : - Position : 468576 - 469853 bp Length : 1278 bp Strand : + Note : KEGG: tkm:TK90_2543 nucleotide sugar dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase DNA sequence : ATGGATCTGAGCGACAAAACTATTGGAGTCATCGGCCTCGGGTATGTCGGGCTTCCGCTTGCCGTCGAGTTCGGCAAGAT ACGGTCCGTCGTCGGTTTCGATGTCAGCGCCGCCCGTGTTGCGGACCTTCGCGAAGGGATCGACCGCACGCGGGAAGTCG AACCGCATGAGCTGGCCGCCGCCCGCTATCTGACCTACACGACTTCTCTGGAAGAGCTTCGATCCTGCGGGGTCTTCATC GTCGCGGTGCCGACACCGATCGACGCCGCCAAGCGACCCGATATCACGCTTTTGAAACGAGCGGCCGAGTCTGTGGGCAA GGTAATCAGCCGTGGCGGCGTCGCGATCTTCGAGTCTACTGTCTATCCGGGCTGCACTGTCAACGATTGCGTTCCCATCA TCGCGAAGCACTCGGGCCTTACCTTCAACCGCGACTTCTTCGTCGGCTACAGCCCGGAACGCATTAATCCCGGCGATAAA CTGCACCGGTTAACGTCGATCATGAAGGTAAGCAGCGGCTCGACGCCGGGAGCTGCGGAGGCCATCGACCGTCTCTACGC CAGCATCATCACGGCCGGCACGTACAAGGCCGCATCTATCGAGGTCGCCGAGGCCGCTAAGGTCATCGAGAACACGCAGC GAGACCTCAACATCGCGCTGATGAACGAGCTTGCCCTCATCTTCCACAAGCTCGGCCTCGACACCGGCGAGGTGCTCGCC GCCGCCGCCACAAAGTGGAACTTCCTGCCGTTCAAGCCAGGCCTCGTCGGCGGCCACTGCATCGGCGTGGACCCCTACTA CCTGACCCATCGCGCGCAGGAGATTGGCTATCATCCTGAGGTGGTGCTCGCCGGCCGGCGTATCAACGACGGCATGGGCG GCCATGTCGCCGACCGCGTCGCGCGCCTGCTGATGAAGCGCGGCTTGCCTGTCGTCGGCTCTCGTATCCTGGTGATGGGC CTGACGTTCAAGGAAAACTGCCCGGATTTGAGGAACTCGCGCGTTATCGACCTGATCCGTGAGCTCAAGGGCTTCAACGC GACGGTCGAGGTGTGGGATCCCAGGGCCGACCCGGCGGAGGCGCACAAGGAGTTCGGCATCACGCTGGAGAGCGGGGAGC CTGCGGCTAGCCGCTACGACGCCGTCATACTCGCCGTCGGCCATAGCGAGTTCGCTGAGATGGGGCCAGCGCGCGTGCGG GCCCTTGGTCGCCCCGAAGCCGTATTATTCGACGTCAAGGGCCTGTTTCCCAAGGCCGCTTCGGATGGGAGGCTGTAG Protein sequence : MDLSDKTIGVIGLGYVGLPLAVEFGKIRSVVGFDVSAARVADLREGIDRTREVEPHELAAARYLTYTTSLEELRSCGVFI VAVPTPIDAAKRPDITLLKRAAESVGKVISRGGVAIFESTVYPGCTVNDCVPIIAKHSGLTFNRDFFVGYSPERINPGDK LHRLTSIMKVSSGSTPGAAEAIDRLYASIITAGTYKAASIEVAEAAKVIENTQRDLNIALMNELALIFHKLGLDTGEVLA AAATKWNFLPFKPGLVGGHCIGVDPYYLTHRAQEIGYHPEVVLAGRRINDGMGGHVADRVARLLMKRGLPVVGSRILVMG LTFKENCPDLRNSRVIDLIRELKGFNATVEVWDPRADPAEAHKEFGITLESGEPAASRYDAVILAVGHSEFAEMGPARVR ALGRPEAVLFDVKGLFPKAASDGRL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tviB | NP_458740.1 | Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 5e-130 | 58 |
| tviB | NP_807945.1 | VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 5e-130 | 58 |
| cap1L | AAA64651.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 1e-108 | 55 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rvan_0399 | YP_004010784.1 | nucleotide sugar dehydrogenase | VFG0431 | Protein | 2e-130 | 58 |
