|
Name : Rvan_2898 (Rvan_2898) Accession : YP_004013203.1 Strain : Rhodomicrobium vannielii ATCC 17100 Genome accession: NC_014664 Putative virulence/resistance : Unknown Product : ABC transporter Function : - COG functional category : R : General function prediction only COG ID : COG4172 EC number : - Position : 3157020 - 3158690 bp Length : 1671 bp Strand : + Note : KEGG: mes:Meso_4080 ABC transporter; PFAM: ABC transporter related; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA DNA sequence : ATGACCGAAACGCAAGCGATACAGCCGACGCCCATCGAAGCCGCTCCCGCAGAAGCGCCGCTGATCGAGGTTCGGAACCT CGCCGTGAAGTTTAACGGCACCGCGCCGGATGTCTTCGCCGCGCGCGATGTCTCCTTCGACATCAAGAAAGGCGAGACGC TTGCGCTCGTGGGCGAATCCGGCTCCGGCAAGACGGTGTCGGCGCTCTCGATCTTGCGCCTGCTCCCGGTGGGCGACGCG ACTAACCCCATCGGCGAAATCTGGTTCGAGGGGCAGGATCTGCTGAAGGCGAAGGAGGCGGACATCCGACGCGTGCGCGG CAACCGCATCTCCATCATCTTTCAGGAGCCGATGACCTCGCTCAATCCGCTGCATACGGTGGAGACACAGGTCAGCGAGG TGCTGAAGGTCCATAAGGGCATGTCGAATACGGCGGCCCGCGAGCGCACGCTGGAACTGCTCACCAAGGTCGGCATCCGC GACCCCGAAAGCCGCCTCGGCGCTTATCCGCATCAGCTTTCCGGCGGCCAGCGGCAACGCGTGATGATTGCCATGGCGCT CGCGAACGAGCCGGACCTGCTCATCGCGGACGAGCCGACGACGGCGCTCGACGTGACGATTCAGGCGCAAATCCTCGACC TTCTGAAAGACCTTCAGCGCGAACTCGGCATGGCGCTGCTTCTCATCACGCACGACCTCGGCATCGTCCGCAAGATGGCG GATCGGACCTGCGTGATGAAGGACGGGCTCGTCGTTGAGCGCGGGCCTGCGGAAGAGGTGTTCACCAACCCGCAGCATCC CTACACGAAGCAGCTGCTCGCCGCGCAGCCAAAGGGCGAAGCGCCGCCGCTCGACGAGACCGCGCCCGTTGTGCTGAAGG CCGACGACCTGAAAGTGTGGTTTCCGATCAAACGCGGCTTCCTGCAAAAGACGGTCGATCACATCAAGGCGGTGGACGGC GTTTCGTTCAAGCTGCGCGCCGGGCAGACGCTCGGCATCGTGGGCGAGTCGGGTTCCGGCAAGACGACGCTCGGCCTCGC CATGCTGCGGCTGATTTCGAGCGAGGGTCAGATTGTCTATGCAGGCCAGCGCATCGACGGGCTGAAGTCGCGCGAGATGC GCCCGCTGCGACGCGAAATGCAGATCGTGTTTCAAGACCCATTCGGCTCGCTCAGCCCACGCCTTTCGGTGGGCCAGATC ATCGAGGAAGGGCTTCTTATCCAGAACCCCGACATGAGCCGCGAGGAGCGCCGCGCGCGCGTTTCGGCCGCGCTGGATGA AGTCGGCCTCAAGCCCGAGTGGCAGGACCGCTACCCGCACGAGTTTTCCGGCGGCCAGCGCCAGCGCATCTCCATCGCCC GCGCCATGATCCTCGAACCGCGCTTCCTCATGCTCGACGAGCCGACGAGCGCGCTCGACGTGTCCGTGCAGGCGCAAATC GTCGACCTGCTCAGCGGCCTCCAGAAGAAGCGCGGCCTCGCCTATCTCTTCATCAGCCACGACCTCAAGGTGATGCGCGC GCTTGCAAGCTACGTCATCGTGATGCGCAACGGCGTGGTGGTGGAGGAAGGGCCGACGCGGGAGATCTTCGAGCACCCGA AGAGCGATTACACCAAGGCGCTCATCGCCGCCGCGCTCGATCACCGCACGCTAGTCGTTCAGGCGGCCTAG Protein sequence : MTETQAIQPTPIEAAPAEAPLIEVRNLAVKFNGTAPDVFAARDVSFDIKKGETLALVGESGSGKTVSALSILRLLPVGDA TNPIGEIWFEGQDLLKAKEADIRRVRGNRISIIFQEPMTSLNPLHTVETQVSEVLKVHKGMSNTAARERTLELLTKVGIR DPESRLGAYPHQLSGGQRQRVMIAMALANEPDLLIADEPTTALDVTIQAQILDLLKDLQRELGMALLLITHDLGIVRKMA DRTCVMKDGLVVERGPAEEVFTNPQHPYTKQLLAAQPKGEAPPLDETAPVVLKADDLKVWFPIKRGFLQKTVDHIKAVDG VSFKLRAGQTLGIVGESGSGKTTLGLAMLRLISSEGQIVYAGQRIDGLKSREMRPLRREMQIVFQDPFGSLSPRLSVGQI IEEGLLIQNPDMSREERRARVSAALDEVGLKPEWQDRYPHEFSGGQRQRISIARAMILEPRFLMLDEPTSALDVSVQAQI VDLLSGLQKKRGLAYLFISHDLKVMRALASYVIVMRNGVVVEEGPTREIFEHPKSDYTKALIAAALDHRTLVVQAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| oppDF2 | YP_005683914.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 6e-87 | 44 |
| cpfrc_01561 | YP_003783961.1 | hypothetical protein | Not tested | PiCp 6 | Protein | 6e-87 | 44 |
| oppDF2 | YP_005686002.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 6e-87 | 44 |
| oppDF2 | YP_005681814.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 6e-87 | 44 |
| dppD | YP_005160017.1 | putative peptide ABC transport system ATP-binding protein | Not tested | Not named | Protein | 7e-99 | 44 |
