Gene Information

Name : Rvan_2472 (Rvan_2472)
Accession : YP_004012787.1
Strain : Rhodomicrobium vannielii ATCC 17100
Genome accession: NC_014664
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1134
EC number : -
Position : 2695086 - 2695769 bp
Length : 684 bp
Strand : +
Note : KEGG: azc:AZC_0042 ABC-2 transporter; PFAM: ABC transporter related; SMART: ATPase AAA

DNA sequence : 
ATGACGCCCTCCGACTTCGTTGAAAATGGCTCCGACAGGATCACGGTAGATAATATCGTCAAAGAATATGAAAGCACGAT
CGGCGTACGCCGCGTTCTTGACGGGATTTCCTTCTCGGTCGAGCGGGGCGAGAAAATCGCGATCCTCGGTCGCAATGGCG
CTGGCAAGTCCACGCTTGTCAGAATCATCGGAGGGGTTGATATGCCTACATCCGGGCGCATCATTCGTGGCATGTCAATG
TCCTGGCCTCTCGCCTTGGCGGGCGGTTTCGAAATGACGATGTCGGGGCATGACAACATTCGTTTCATTGCAAGGATCTA
CAACAGACCCTTCGCCGACGTGGCTGCTTTCGTTGATGACTTTGCAGAACTTGGGCGACAGCTCTACATGCCCGTAAAGA
CGTATTCTTCCGGCATGCGCGCGAGATTAGCCTTTGCATTGACGCTTGCGGTCGATTTTGATTGTTTTCTCATCGACGAA
GTTATCTCGGTTGGAGATCAGCGTTTCCATGCCAAGTGTCACGACGCGCTTTTTGTTCAGAGATCTCATTGTTCAATGAT
AATGATAAGTCACGACACAAATATCGTCAAACAATACTGTAGTAAGGCATTAATTCTGAAAAACGGGAGAGGAAAAGTTT
TCGATGATATCGAGTTTGGCCTGGATATATATTCGACCCTGTGA

Protein sequence : 
MTPSDFVENGSDRITVDNIVKEYESTIGVRRVLDGISFSVERGEKIAILGRNGAGKSTLVRIIGGVDMPTSGRIIRGMSM
SWPLALAGGFEMTMSGHDNIRFIARIYNRPFADVAAFVDDFAELGRQLYMPVKTYSSGMRARLAFALTLAVDFDCFLIDE
VISVGDQRFHAKCHDALFVQRSHCSMIMISHDTNIVKQYCSKALILKNGRGKVFDDIEFGLDIYSTL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 1e-53 55
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 6e-42 44
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 2e-41 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rvan_2472 YP_004012787.1 ABC transporter VFG0258 Protein 5e-54 55
Rvan_2472 YP_004012787.1 ABC transporter VFG0696 Protein 4e-52 52
Rvan_2472 YP_004012787.1 ABC transporter VFG2563 Protein 1e-50 51
Rvan_2472 YP_004012787.1 ABC transporter VFG1449 Protein 7e-42 43