Gene Information

Name : Rvan_2377 (Rvan_2377)
Accession : YP_004012700.1
Strain : Rhodomicrobium vannielii ATCC 17100
Genome accession: NC_014664
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator PhoB
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2592562 - 2593272 bp
Length : 711 bp
Strand : -
Note : TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; KEGG: azc:AZC_4032 phosphate regulon transcriptional regulatory protein; SMART: response regulator

DNA sequence :
ATGAATGCCAAGATTCTGATTGTCGAAGACGAAGAGGCCCTCGCTCTTTTGCTTCAATATAATCTCGAAGCAGAGGGCTT
TTCGGTTTCCATCTCGCAGCGCGGCGACGAGGCGGAAGTTGCCATCGGCGAAGAGCCGCCGGATCTCATCATCCTCGACT
GGATGTTGCCCGGGCTCTCGGGTATCGAGCTATGTCGCCGCCTGCGCGCGGGGAAAACGGCGCGAACAATTCCGATCCTG
CTCCTGACGGCGCGCGGCGAAGAGACGGATCGCATTCGCGGCCTGACCGTCGGCGCGGACGATTATGTGGTGAAGCCGTT
TTCGGTGCCGGAACTTCTGGCGCGCGTGAAGGCGATCCTTCGCCGTGCCGCGCCGGAGCGCATATCGCAAACGCTTGAGG
TTGAGGACATCGAACTCGACCGCGAAACTTATCGCGTGATGCGAAGCGGCCGCGAGGTGCGGCTCGGCCCGACCGAGTTC
AAGCTTCTGGAATTTCTGATGGAAAGCCCCGGCCGCGTGTTCTCGCGGACGCAGTTGCTCGACGGCGTATGGGGCCGCGA
CGTCTATGTGGACGAACGCACGGTGGACGTGCACATCGGACGCCTACGCAAGGCAATTAATCGGGGCAAGGAAAAAGACC
CGATCCGCACCGTTCGCGGCGCGGGTTATGCGCTGGGCGAGAGATTTCCGGGGCAGAGCTTATCCGAGTAG

Protein sequence :
MNAKILIVEDEEALALLLQYNLEAEGFSVSISQRGDEAEVAIGEEPPDLIILDWMLPGLSGIELCRRLRAGKTARTIPIL
LLTARGEETDRIRGLTVGADDYVVKPFSVPELLARVKAILRRAAPERISQTLEVEDIELDRETYRVMRSGREVRLGPTEF
KLLEFLMESPGRVFSRTQLLDGVWGRDVYVDERTVDVHIGRLRKAINRGKEKDPIRTVRGAGYALGERFPGQSLSE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-27 41
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 4e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB HE999704.1.gene2815. Protein 3e-41 45
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB NC_002952.2859905.p0 Protein 1e-43 44
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB NC_002758.1121668.p0 Protein 1e-43 44
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB NC_009641.5332272.p0 Protein 1e-43 44
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB NC_013450.8614421.p0 Protein 1e-43 44
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB NC_007793.3914279.p0 Protein 1e-43 44
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB NC_003923.1003749.p0 Protein 2e-43 44
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB NC_007622.3794472.p0 Protein 9e-44 44
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB NC_002745.1124361.p0 Protein 1e-43 44
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB NC_009782.5559369.p0 Protein 1e-43 44
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB NC_002951.3237708.p0 Protein 1e-43 44
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB AE000516.2.gene3505. Protein 8e-36 43
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB BAC0596 Protein 1e-35 43
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB BAC0039 Protein 1e-35 43
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB CP001138.1.gene2239. Protein 1e-35 43
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB NC_002695.1.916589.p Protein 9e-36 43
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB CP001918.1.gene3444. Protein 8e-36 43
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB CP000034.1.gene2186. Protein 1e-35 43
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB NC_012469.1.7686381. Protein 8e-38 42
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB NC_010410.6002989.p0 Protein 1e-34 42
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB BAC0197 Protein 3e-30 42
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB NC_010400.5986590.p0 Protein 2e-34 42
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB NC_011595.7057856.p0 Protein 1e-34 42
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB AE016830.1.gene1681. Protein 2e-36 42
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB BAC0111 Protein 7e-34 42
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB CP000647.1.gene2531. Protein 1e-35 42
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB AE015929.1.gene1106. Protein 6e-35 41
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB NC_012469.1.7685629. Protein 8e-37 41
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB CP004022.1.gene1676. Protein 6e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB VFG1390 Protein 7e-38 43
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB VFG1386 Protein 4e-33 43
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB VFG1389 Protein 3e-28 42
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB VFG0596 Protein 9e-28 41
Rvan_2377 YP_004012700.1 winged helix family two component transcriptional regulator PhoB VFG1702 Protein 2e-32 41