Gene Information

Name : Rvan_1852 (Rvan_1852)
Accession : YP_004012193.1
Strain : Rhodomicrobium vannielii ATCC 17100
Genome accession: NC_014664
Putative virulence/resistance : Resistance
Product : Cys/Met metabolism pyridoxal-phosphate-dependent protein
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0626
EC number : -
Position : 2029241 - 2030407 bp
Length : 1167 bp
Strand : +
Note : PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: rru:Rru_A0786 cystathionine gamma-lyase

DNA sequence : 
GTGGCCAAACATCACCGACACACGAAAACGGCGACAAAAGTTGTGCATGCGGGCGTCGAGCACGATGCCACCGGCGCCGT
GATGACGCCGATTTACGCCTCATCGACCTTCGCGCAAAGCTCGCCCGGCAAGCACACCGGCTGGGAATATGCGCGCTCCG
GCAACCCGACGCGCGCGGCATTTGAAAAAGCGGTGGCCGACCTCGAAGGCGGCATCGCGGGCTTTGCCTTCGCGTCGGGC
ATGGCGGCCGAGGCGACGGTGCTGGAACTGCTCGACCATGGCAGCCACATCGTGGCGAGCGACGACCTTTACGGCGGCAC
GTGGCGGCTTCTCGAACGCGTCCGCAAGCGCACGGCGGGGCATTCGGTGACGTTTGTCGACGTGACCGACCTCGACGCCG
TCAAGGCGGCCGTGCAGAAAGGCAAGACGCGCGTCATCTGGGTGGAATCGCCGACGAATCCGCTGCTCAAGGTGCCAGAC
CTCGCCGCCATCGCCGCCATCGGCAAGAGCGCGGGCGCGCTGACGGTTGCGGACTCGACCTTCGCCTCGCCGGTCATCCA
GAAGCCGCTCGATCTCGGCTTCGACATCGTGCTGCATTCGGCGACGAAATATCTGTCCGGCCATTCGGACATCATCGCGG
GCGTCGTCGCTGTGAAGGAGCCCGCGCTCGCGGACGCGCTGCGCTTCCTGCAAAACGCGACGGGCGCGGTGCTCGATCCG
TTCCCGGCGTTCCTCGCCCTTCGCGGCCTGAAGACGCTGGCGCTTCGCATCGAGCGGCACAGCGCGAACGCGCTCGCCAT
CGCGCAGTCGCTTGAAGGCCATCCAAAGCTCAAACGCGTGATCTATCCCGGCCTGAAGAGTCATCCGCAGCATCAGGTTG
CCGCGCGGCAGATGAACGGCTTCGGCGGCATGCTGACCATCGACATCGATACAGACGAGGGAGGCGTGCGGCGCGTGCTG
GAGAATCTCAACCTGTTCACGCTCGCGGAGAGCCTCGGCGGTGTCGAAAGCCTCGCGGGGCACCCGTACACCATGAGTCA
CGGTTCGTTGCCGCCGGAACGCCGCGATGCGCTCGGCATCGGCTGGGGGCTCGTGCGGCTCTCGGCGGGTATCGAGGACG
CGGGCGACCTCATCGCCGACTTGCGGCAGGCGTTGGAGCGCGCGTAA

Protein sequence : 
MAKHHRHTKTATKVVHAGVEHDATGAVMTPIYASSTFAQSSPGKHTGWEYARSGNPTRAAFEKAVADLEGGIAGFAFASG
MAAEATVLELLDHGSHIVASDDLYGGTWRLLERVRKRTAGHSVTFVDVTDLDAVKAAVQKGKTRVIWVESPTNPLLKVPD
LAAIAAIGKSAGALTVADSTFASPVIQKPLDLGFDIVLHSATKYLSGHSDIIAGVVAVKEPALADALRFLQNATGAVLDP
FPAFLALRGLKTLALRIERHSANALAIAQSLEGHPKLKRVIYPGLKSHPQHQVAARQMNGFGGMLTIDIDTDEGGVRRVL
ENLNLFTLAESLGGVESLAGHPYTMSHGSLPPERRDALGIGWGLVRLSAGIEDAGDLIADLRQALERA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAR0460 YP_039909.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 1e-75 46
SAS0418 YP_042545.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 1e-76 46
metB YP_281510.1 cystathionine beta-lyase Not tested Not named Protein 1e-56 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rvan_1852 YP_004012193.1 Cys/Met metabolism pyridoxal-phosphate-dependent protein BAC0207 Protein 1e-60 45