|
Name : Rvan_1811 (Rvan_1811) Accession : YP_004012152.1 Strain : Rhodomicrobium vannielii ATCC 17100 Genome accession: NC_014664 Putative virulence/resistance : Virulence Product : type II secretion system protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 1979615 - 1981171 bp Length : 1557 bp Strand : + Note : PFAM: type II secretion system protein E; general secretory system II protein E domain protein; KEGG: gspE; general secretion pathway protein E DNA sequence : GTGACGCCCGAAATCGCGCACCGCTATTGGCTGCCCTTCGACGATCTGAACGGCGTCAAGATCGAACCCGAGGCGCTTGA GCGCTTGGCGGCTTCGGACGCGAGACGGCTCGGAGTGGCCCCGCTACGCGTCGAAGGCCCCATTCTTTACGTCGCCACCA GCCGACCCGACGACCTGGAACTCGAGCAGACGCTTAGCCTTTTGTGCAAAAGTCAGATAGAATTTATAGGCAGCCCGGCC GAGGCGATTGACGCCTTGCTCAACAAGTCCGGCGATGGCCGCACGCTGCTCGAAGACGTGAGGGACGAGTTCAGCCTCGC GCTTGTACGCGAGACGGAGCAGGGCAGCAGCGAGGCCATCGATCTGGACGCCTTCGGCAAGGACGCCGCACCGGTGGTGA GGCTCGTCAACGAAACGATCCGTGCGGCGCTCCAGAAGCAGGCGAGCGACATCCACATTCACTCGGATGCGGCTGGCGTC TCGGTCGATTTCCGGACCGATGGCGTTCTGACGCGGGCGCTCGGGCCTTTCGACCCTGCCTATCAGCCCACAATCGTGTC GCGGATAAAGGTCATGGCAGACCTCGATATCGCCGAGCACCGCATTCCGCAGGATGGCCGCTTCCGGCTTCGCGGCAGGC AAGGCGATATCGATTTTCGCGTTTCCGTATTGCCGGGAGTTCACGGCGAAGACATCGTCATCCGCGTGCTCGACAAAGCC CATTTGATGGAAAAAAGCAGGGCACTGACCCTCGAAGCGCTTGGCTACGAGGAGAAAGACCGCGAAACGCTCGCCCGCAT AGCCCGCGCGTCGGCTGGTATGCTCCTTGTTACGGGGCCAACCGGGTCGGGTAAAACAACCACCCTTTACGCCTGCCTCT CCGAGTTCAGCACGCGTGAGGAAAAGGTCATCACCATCGAGGACCCGGTCGAGTATGAGCTGCCCGGCGTGTTACAGGTA CCTGTGGCCGACAAGAAGGGGCTGACCTTCGCCCGTGGCCTCCGGTCCATCCTGCGGCACGACCCGGACAGGATCATGGT GGGCGAGATCCGCGACCGGGAGACAGCGTCGATTGCCGTTCAAGCGGCTCTGACGGGGCACTTTGTCTTTACGACCGTGC ACGCCAACAACGCCATCGACGTGATCTCTCGCTTCACGCATATGGAGATCGATCTTCATGAGCTTGTGGCGGCATTGAGC TGCGTCGTCGCACAGCGGCTCCTGCGCCGCCTTTGCAGCTCCTGCTCCGTTCCTCGCGTCTACGCTCAGCGGGAGCTTGC GGCCTTGGGCCTCGACGAGACATCCTTTGCCGTCGGCGCATGGCGCGAAGCGAAAGGATGCGATGAGTGCGACGGCATGG GGTATGCGGGGCGCACGGTCGCCGCTGAAGTGCTTATCCTGACCCCCGAGTTTAAACAGATGATCGTGGAGCGCCGCGCC ACCGAAGACATGCGAGCGGTGGCGTTGCGAAACGGGTTCCGGGAAATGCGGCAAGCGGCGCTGGCGAAAGCAGCCCAAGG CTTGACTTCGCTTCCAGAAGTGGCGCGGGTGACATGA Protein sequence : MTPEIAHRYWLPFDDLNGVKIEPEALERLAASDARRLGVAPLRVEGPILYVATSRPDDLELEQTLSLLCKSQIEFIGSPA EAIDALLNKSGDGRTLLEDVRDEFSLALVRETEQGSSEAIDLDAFGKDAAPVVRLVNETIRAALQKQASDIHIHSDAAGV SVDFRTDGVLTRALGPFDPAYQPTIVSRIKVMADLDIAEHRIPQDGRFRLRGRQGDIDFRVSVLPGVHGEDIVIRVLDKA HLMEKSRALTLEALGYEEKDRETLARIARASAGMLLVTGPTGSGKTTTLYACLSEFSTREEKVITIEDPVEYELPGVLQV PVADKKGLTFARGLRSILRHDPDRIMVGEIRDRETASIAVQAALTGHFVFTTVHANNAIDVISRFTHMEIDLHELVAALS CVVAQRLLRRLCSSCSVPRVYAQRELAALGLDETSFAVGAWREAKGCDECDGMGYAGRTVAAEVLILTPEFKQMIVERRA TEDMRAVALRNGFREMRQAALAKAAQGLTSLPEVARVT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 6e-64 | 42 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 5e-64 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rvan_1811 | YP_004012152.1 | type II secretion system protein E | VFG2426 | Protein | 1e-67 | 44 |
| Rvan_1811 | YP_004012152.1 | type II secretion system protein E | VFG0182 | Protein | 2e-73 | 44 |
| Rvan_1811 | YP_004012152.1 | type II secretion system protein E | VFG0233 | Protein | 5e-69 | 44 |
| Rvan_1811 | YP_004012152.1 | type II secretion system protein E | VFG1876 | Protein | 1e-70 | 43 |
