Gene Information

Name : Rvan_1256 (Rvan_1256)
Accession : YP_004011618.1
Strain : Rhodomicrobium vannielii ATCC 17100
Genome accession: NC_014664
Putative virulence/resistance : Unknown
Product : IstB domain-containing protein ATP-binding protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1484
EC number : -
Position : 1389806 - 1390603 bp
Length : 798 bp
Strand : -
Note : KEGG: bbt:BBta_p0100 insertion sequence IS21-like; ATP-binding protein; PFAM: IstB domain protein ATP-binding protein; SMART: ATPase AAA

DNA sequence :
ATGTCTTCCTGCGACGACCGGCTTTTGGACATGCTCGGCAAGCTCAAGCTGTTCGGCATCCGCGATCGGCTCGACAGCCT
GCTCGACGAGGCCTCCCGTTCCGACCTCGACATGCGCCAGACGCTGACGCTGCTCTTGGAGCGTGAGATTGCGCGCAAGG
ACGCGCGCCGGATCGAGATGGCGCTGAAGCTCGCTCACTTCCCGATGGTACGGGACCTCACAGGCTTCGACTTCGCGGCG
CAGCCCTCCGTCGACGCCAGACAAGTGCGCGATCTCGCGGCTGGACGCTGGATCGCGAACGGCGAGAATGTGCTCCTGCT
CGGGCCGCCCGGCGTCGGGAAAACCCATCTCGCCATCGCGCTCGGGCGCGAGGCCATTCTGGCGGGTTACGCCGCGCTCT
TCATGCCGGCGACTGCGCTGGTGGCGCAACTCGCGAGGGCGCATGTGGAAGGCCGGCTCGAGGATCGGCTCATGCACTTC
GCCAAACCGAAGCTCCTGATCGTGGACGAACTGGGCTACCTGCCGTTCGAGCCCTCTGCGGCGCATCTGTTCTTCCAGCT
TGTCTCGCGCCGCTACGAAAAGGGCGCGATGCTGATGACCTCGAACCGAAGCGTCGGCGAATGGGACGCCGTGTTCGGCG
ATCCGGTCGTGGCGACCGCGATCCTCGACCGCATGCTCCATCACAGCCACGTCATCACCATCCGCGGCGACAGCTACCGC
CTCAAGGAAAAACGTCGCAGCGGTCTTCTGCAGAAGACCGCTGCGACAGAACCAAAGCCTCAAAGGACTGATCAATGA

Protein sequence :
MSSCDDRLLDMLGKLKLFGIRDRLDSLLDEASRSDLDMRQTLTLLLEREIARKDARRIEMALKLAHFPMVRDLTGFDFAA
QPSVDARQVRDLAAGRWIANGENVLLLGPPGVGKTHLAIALGREAILAGYAALFMPATALVAQLARAHVEGRLEDRLMHF
AKPKLLIVDELGYLPFEPSAAHLFFQLVSRRYEKGAMLMTSNRSVGEWDAVFGDPVVATAILDRMLHHSHVITIRGDSYR
LKEKRRSGLLQKTAATEPKPQRTDQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y1094 CAD33719.1 ORF B protein Not tested PAI I 536 Protein 5e-39 46
unnamed CAB46598.1 IS100 transposase Not tested HPI Protein 1e-45 41
s0036 CAD33774.1 ORF B protein Not tested PAI I 536 Protein 1e-45 41
y1093 CAD42087.1 OrfB protein of IS100 transposase Not tested PAI II 536 Protein 1e-45 41
YPTB1586 YP_070114.1 transposase/IS protein Not tested HPI Protein 1e-45 41
orfB CAE85183.1 OrfB protein, transposase, IS100 Not tested PAI V 536 Protein 1e-45 41
unnamed CAA21402.1 - Not tested HPI Protein 1e-45 41
api84 CAF28558.1 putative transposase Not tested YAPI Protein 1e-45 41
y1093 CAC43411.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 1e-45 41
aec58 AAW51741.1 Aec58 Not tested AGI-3 Protein 2e-45 41
YPO1901 YP_002346891.1 transposase/IS protein Not tested HPI Protein 1e-45 41
y2410 NP_669717.1 transposase/IS protein Not tested HPI Protein 1e-45 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rvan_1256 YP_004011618.1 IstB domain-containing protein ATP-binding protein VFG1460 Protein 3e-39 46
Rvan_1256 YP_004011618.1 IstB domain-containing protein ATP-binding protein VFG1515 Protein 6e-46 41
Rvan_1256 YP_004011618.1 IstB domain-containing protein ATP-binding protein VFG1627 Protein 6e-46 41
Rvan_1256 YP_004011618.1 IstB domain-containing protein ATP-binding protein VFG1606 Protein 6e-46 41