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Name : lysS (REQ_00590) Accession : YP_004004905.1 Strain : Rhodococcus equi 103S Genome accession: NC_014659 Putative virulence/resistance : Unknown Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 66404 - 69706 bp Length : 3303 bp Strand : - Note : - DNA sequence : GTGACGCCGAAACGCGGGCGGCTGTCGGAGGTTCCGCACATCGCGGGCCTCGTCCTCGGCGTCTTCTCGGTGCTGGTGTT CCTGTGGAGCCTGTCGCCCGCGCTGCGCTACCTGGTGCACACGCCGCGCCTGTACATCGACGACTACTACTTCGACGCCC CCGACACGAGCCTGTCGTGGGCCGTCGTGGTCGGTCTGGTGGCGGCCGCACTCGCGAGCCGCAAACGGATCGCGTGGTGG TTGCTGACGATCTACCTGACCCTCTTCGCAGTTCTCAACGCGGTCACCGCGGTGGCGGACGAGAACGTCAACGCCGCCGT CGCGTGCGTCGTGCAGCTCGCGGTCGTCGGGATCCTGATCGCGGCCCGCAAGGAGTTCTACACGCGGGTCCGCCGCGGCG CCGCGTGGAAGGCATTGGGCGTCCTCGTGTCCGGCCTGGCGGTGGGCACCCTGCTGGGCTGGGGGCTGGTGGAGCTGTTC CCGGGCACGCTGCCGTCGGGTCAGCGGTTCCTGTGGGCCCTCAACCGCGTCACCGCCCTCGTCGTGGTCGAGAACGAACA GTTCGACGGCCACCCCCACGTCTTCGTCAACACCCTGCTGGGACTGTTCGGGGCGCTCGCCCTGCTCGCGGCGGTGATCA CGCTGTTCCGCTCGCAGCGGGCGTCGAACGCGCTGACCGGCGACGACGAATCGGCGTTGCGCGGCCTGCTCGACAGCTTC GGTGCCGACGACTCCCTGGGCTACTTCGCGACCCGCCGCGACAAGGCCGTCGTCTTCGCTCCGAGCGGCAAGGCCGCCGT CACCTACCGCGTGGAGATCGGCGTGTGCCTGGCCAGCGGCGACCCGATCGGCAACCCGGAGGCGTGGCCGCACGCGATCG ACGCGTGGCTCGCCCTGTGCTCCAAGTACGGCTGGGCGCCCGCCGTGATGGGAGCGAGCGAGGCCGGCGCCACCGCGTAC AAGCGGGCCGGTCTGTCGGTGCTCCAGCTCGGCGACGAGGCGATCCTCGAAACCCGGGAGTTCAATCTGAACGGCCGCGA GATGCGGCAGGTCCGCCAGGCCGTGCACCGGGTCCGGAAGCAGGGCGTCACCGTCCGCATCCGACGCCACCGCGACATCC CGCCCGCCGAGATGGCCGACGTCGTCGCGCGTGCAGATGCGTGGCGCGACACCGAGACCGAGCGCGGCTTCTCGATGGCC CTGGGCCGGCTCGGCGATCCCCTCGACGGCGACTGCCTCCTGGTCGAGGCGCTCGGCGAGGACGGCACGGTGCTGGGCAT GCTGTCGCTGGTGCCGTGGGGTCCGAACGGCGCATCGCTCGACCTGATGCGCCGGAACCCGGACGCCCCCAACGGTGTAG TCGAACTGATGGTCACCGAACTCGCGACCCGTTCCGACGAGTTCGGCGTCGTGCGGGTGTCGCTCAACTTCGCGGTGTTC CGCTCCACGTTCGAGGAGGGCGCGCGCATCGGCGCCGGTCCGATCCTGCGGGTCTGGCGGTCGATGCTGCTGTTCTTCTC CCGGTGGTGGCAGCTCGAGGCTCTGTACCGCTCGAACGTCAAGTACCAGCCCGAATGGGCGCCGCGGTACCTGTGCTTCG ACGACAACCGGCAGCTGCCGCGCGTCGGAATCGCGTCGGCGATCGCCGAGGGTTTCCTGACGTTGCCCACGTTCGGGCAC CGGGCGAAGGCGCCCACGCACACCGGGACCCGCGCCGCGGTGCCGGCGGCGCTCGCCGTCTCCGGTGTCCTGCACGCGGA CGGCAGTGCGCCCGACGCCGCCGCTCCGGCGGCCGACGCGCCCACGGGCAGGACGGACGGGACGGCCCCGGAATCGGTGG GACCGCGCCGGCCCGAACAGGTTCGCGTGCGCATGGACAAACTCGCCCGCCTGGCCGACGAGGGCATCGATCCGTACCCC GTCGCCTACCCGCCCACCCACACCGTCGCCGCCGCGACGTCGTCCCCGGAGGGCACCCGCGTGCGAATCGCGGGGCGCCT GTTGCGGATCCGCACGTACGGCGGCGTCGCGTTCGCGGTGCTGCGGGACTGGTCCGGCGACATCCAGGTGCTCATCGAAC GCACCACGGTCGGCGACCGGCTCGACGAGTTCTCCACCGACTTCGACCTCGGCGACCTCATGGAGGTGAGCGGCACCATC GGCCGCAGCCGCAAGGGTGAACTGTCGCTGCTGGCGACGGAGTGGCGCATGAACGGCAAATGCCTGCACCCCCTGCCCGA CAAGTGGAAGGGCTTGACGGACGCGGAAACTCGCGTGCGGCAGCGTTACGTCGACCTCGCGATCAACCCCGAGTCGCGGC GGCTGCTGGCGGCGCGTACCGCGATCGTGAAGTCGCTGCGCGACACCCTCGCCGGCCGCGACTACCTCGAGGTGGAGACG CCGATCCTGCAGCGTATCCACGGCGGCGCCAACGCGGCCCCCTTCGTCACCCATATCAATGCGTACGACCTGGACCTGTA CCTGCGGATCGCACCGGAGTTGTTCCTCAAACGTCTGTGTGTGGCCGGTATGGAGAAGGTGTTCGAGATCGGGCGGGTGT TCCGCAACGAGGGCGTCGACTTCAAGCACAACCCGGAGTTCACGATCCTCGAGGCGTACGAGGCCCACAGCGACTACGAA CGCATGATGGTGCTGTGCCGCGAGCTGATCCAGGCCGCGGCCGTCGCCGCACACGGCAGCCAGACGATCATGCGTCCCGG CCCGGACGGCGAACTCGTCGCCGTCGACATCTCCGGCGAATGGCCCGTGAAGACGATGCACGGCGCGGTCGCCGAGAAAC TGGGCGTGGACGTCAGCCCGGAGACACCCCTCGAGGTGCTGCAGAAGTTGTGCGACGAGAACGACATCGAGTACCAGAAG AGCTGGGACGCAGGCGCGGTCGCGCAGGAGATGTACGAGCATCTGGTGGAGGGTCAGACCGAGTTCCCCACCTTCTACAC CAACTTCCCGACGTCGATGTCGCCGCTGACCCGCCCCCACCCCACCATCCCCGGTGTGGCCGCGAAGTGGGATCTGGTGG CGTGGGGCGTCGAACTCGGCACCGCGTACAGCGAACTCACCGATCCCATCGACCAGCGACGACGGCTCACCGAGCAGTCG CTGCTCGCGGCCGGCGGCGACGCGGAGGCGATGGAACTCGACGAGGACTTCCTGCAGGCGCTCGAGCACGCGATGCCGCC CACCGGCGGGCTCGGTATGGGCGTCGACCGGATCGTCATGCTCATCACCGGCGGCAGCATCCGCGAATCGCTGGCGTTCC CGTTCGCCAAGCCGCGCAACTGA Protein sequence : MTPKRGRLSEVPHIAGLVLGVFSVLVFLWSLSPALRYLVHTPRLYIDDYYFDAPDTSLSWAVVVGLVAAALASRKRIAWW LLTIYLTLFAVLNAVTAVADENVNAAVACVVQLAVVGILIAARKEFYTRVRRGAAWKALGVLVSGLAVGTLLGWGLVELF PGTLPSGQRFLWALNRVTALVVVENEQFDGHPHVFVNTLLGLFGALALLAAVITLFRSQRASNALTGDDESALRGLLDSF GADDSLGYFATRRDKAVVFAPSGKAAVTYRVEIGVCLASGDPIGNPEAWPHAIDAWLALCSKYGWAPAVMGASEAGATAY KRAGLSVLQLGDEAILETREFNLNGREMRQVRQAVHRVRKQGVTVRIRRHRDIPPAEMADVVARADAWRDTETERGFSMA LGRLGDPLDGDCLLVEALGEDGTVLGMLSLVPWGPNGASLDLMRRNPDAPNGVVELMVTELATRSDEFGVVRVSLNFAVF RSTFEEGARIGAGPILRVWRSMLLFFSRWWQLEALYRSNVKYQPEWAPRYLCFDDNRQLPRVGIASAIAEGFLTLPTFGH RAKAPTHTGTRAAVPAALAVSGVLHADGSAPDAAAPAADAPTGRTDGTAPESVGPRRPEQVRVRMDKLARLADEGIDPYP VAYPPTHTVAAATSSPEGTRVRIAGRLLRIRTYGGVAFAVLRDWSGDIQVLIERTTVGDRLDEFSTDFDLGDLMEVSGTI GRSRKGELSLLATEWRMNGKCLHPLPDKWKGLTDAETRVRQRYVDLAINPESRRLLAARTAIVKSLRDTLAGRDYLEVET PILQRIHGGANAAPFVTHINAYDLDLYLRIAPELFLKRLCVAGMEKVFEIGRVFRNEGVDFKHNPEFTILEAYEAHSDYE RMMVLCRELIQAAAVAAHGSQTIMRPGPDGELVAVDISGEWPVKTMHGAVAEKLGVDVSPETPLEVLQKLCDENDIEYQK SWDAGAVAQEMYEHLVEGQTEFPTFYTNFPTSMSPLTRPHPTIPGVAAKWDLVAWGVELGTAYSELTDPIDQRRRLTEQS LLAAGGDAEAMELDEDFLQALEHAMPPTGGLGMGVDRIVMLITGGSIRESLAFPFAKPRN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysX | YP_003784331.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 5e-164 | 43 |
| lysS1 | YP_005686365.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 5e-164 | 43 |
| lysS1 | YP_005682181.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 1e-163 | 43 |
| lysS1 | YP_005684273.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 5e-164 | 43 |
