Gene Information

Name : Calow_1994 (Calow_1994)
Accession : YP_004003314.1
Strain : Caldicellulosiruptor owensensis OL
Genome accession: NC_014657
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2097127 - 2097852 bp
Length : 726 bp
Strand : -
Note : KEGG: csc:Csac_0660 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence :
ATGATAGAGCTTATTGATATTTACAAGATTTACAAGATTGGGGACACTGATGTATATGCATTAAACGGCGTAAATCTCAA
GATAGAGAAAAACGAATTTGTAGCCATATTAGGTCCGTCTGGTTCTGGCAAATCCACGCTTATGAACATCATAGGGTGTC
TTGACACACCAACATCTGGGACATATATTTTAGATGGGAATGAGGTCAGCAAACTTTCAGACAACCAGCTTGCAGAGATA
CGAAACAGGAAGATAGGTTTTGTATTTCAGCAGTTTAACCTGATTGCGCAGCTTACTGCACTTGAAAATGTTGAACTTCC
GCTAATATATCAAGGGATTTCGGCATCAAAGAGGCACAGGCTTGCAAAAGAGGCGTTAGAGAGAGTAGGATTGTCAGACA
GGCTCAATCACAGACCAAGACAGCTGTCTGGTGGTCAGCAGCAAAGGGTTGCGATAGCAAGGGCGCTTGTTACCAATCCA
CCAATAATTTTAGCTGACGAGCCGACAGGTAACCTTGACTCAAAATCTGGTGCGGAGATAATGCAGATTTTTAAAGAGCT
TCATGCGCAAGGCAATACCATAGTTTTAATTACTCATGACAACAACATAGCAGCTCAGGCGAAAAGGATTGTTCGTATTT
CGGATGGGCAAATCATAGAAGATAGGCAGGCTTCAGCAGCTTGGAACAAACTTGATTCAGATAAACATTACCGGTCGCGG
CAGTAA

Protein sequence :
MIELIDIYKIYKIGDTDVYALNGVNLKIEKNEFVAILGPSGSGKSTLMNIIGCLDTPTSGTYILDGNEVSKLSDNQLAEI
RNRKIGFVFQQFNLIAQLTALENVELPLIYQGISASKRHRLAKEALERVGLSDRLNHRPRQLSGGQQQRVAIARALVTNP
PIILADEPTGNLDSKSGAEIMQIFKELHAQGNTIVLITHDNNIAAQAKRIVRISDGQIIEDRQASAAWNKLDSDKHYRSR
Q

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 1e-38 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-33 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-34 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 5e-34 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-34 42
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 1e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Calow_1994 YP_004003314.1 ABC transporter-like protein NC_012469.1.7686878. Protein 4e-64 59
Calow_1994 YP_004003314.1 ABC transporter-like protein CP001581.1.gene598.p Protein 9e-44 52
Calow_1994 YP_004003314.1 ABC transporter-like protein CP001581.1.gene798.p Protein 3e-42 47
Calow_1994 YP_004003314.1 ABC transporter-like protein NC_008702.1.4606598. Protein 5e-49 47
Calow_1994 YP_004003314.1 ABC transporter-like protein NC_012469.1.7685735. Protein 2e-37 44