Gene Information

Name : Calow_1970 (Calow_1970)
Accession : YP_004003294.1
Strain : Caldicellulosiruptor owensensis OL
Genome accession: NC_014657
Putative virulence/resistance : Virulence
Product : capsular exopolysaccharide family
Function : -
COG functional category : D : Cell cycle control, cell division, chromosome partitioning
COG ID : COG0489
EC number : 2.7.10.2
Position : 2072889 - 2073662 bp
Length : 774 bp
Strand : -
Note : KEGG: dae:Dtox_4107 capsular exopolysaccharide family; TIGRFAM: capsular exopolysaccharide family

DNA sequence : 
ATGAATGCCGTCAAAGAAGTCATAGCACTATATAATCCTCGCTCGCCCATTACAGAAAGTTATAGAATGCTTCGAACCAA
TATTCAGTATTCAAGTCTGGACAAGCCAATAAAGACGATAGTTATAACTAGTACAGGACCTTCGGAAGGAAAAACTATTA
CATGTGCAAATCTTGCAGTTGTAATGGCCCAAGCAGGGAGTAAAGTTCTTGTAATAGATGCAGACTTAAGACGCCCTGCA
ATACATAAAGTATTTGGAGTCAGTAACAAAGTGGGATTGACAAATCTTCTTGTAGAAAACAAAAAGTTTGAGGAGATTGT
ACAAAAAGATGGTGTTGAAGGATTAGACTTGATAACATCAGGTCCTATTCCACCAAATCCAGCTGAACTACTTGGTTCCA
AGAAATTTGAAAATTTCTTAAATACAATTAGCCAAAGCTACGATTACATAATTATAGATACACCACCATGTGGTAGCTTG
ACAGATGCAGCTATAATTGGCAGGATAGTAGATGGTGTAATTTTGGTAGCAGCTGCAGGTGAGGTGCAGATAGAAGCAAT
TCAGCAGGCGAAGGAGAACTTGCAAAAGGTCAATGCCAACATAATAGGTGTTGTTTTAAATAAAGTAAAACGACAGACAT
CGAGTTATTACTATTATTACTACTATTATTACTATTACACTGATGAAAGTGGTGAAACTGTAAAGAAAAAGAAAGTAGGT
AGGAGAAGGAAGAAAGATGATAGATATACACTGCCATCTGATGGTAGGCGTTGA

Protein sequence : 
MNAVKEVIALYNPRSPITESYRMLRTNIQYSSLDKPIKTIVITSTGPSEGKTITCANLAVVMAQAGSKVLVIDADLRRPA
IHKVFGVSNKVGLTNLLVENKKFEEIVQKDGVEGLDLITSGPIPPNPAELLGSKKFENFLNTISQSYDYIIIDTPPCGSL
TDAAIIGRIVDGVILVAAAGEVQIEAIQQAKENLQKVNANIIGVVLNKVKRQTSSYYYYYYYYYYYTDESGETVKKKKVG
RRRKKDDRYTLPSDGRR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1B AAA64641.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 3e-39 41
SSP0061 YP_300151.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 5e-35 41
cpsFD YP_006310771.1 putative autophosphorylating protein tyrosine kinase Not tested FWisland_4 Protein 6e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Calow_1970 YP_004003294.1 capsular exopolysaccharide family VFG1368 Protein 5e-27 44
Calow_1970 YP_004003294.1 capsular exopolysaccharide family VFG1349 Protein 9e-29 41