Gene Information

Name : Lbys_0549 (Lbys_0549)
Accession : YP_003996669.1
Strain : Leadbetterella byssophila DSM 17132
Genome accession: NC_014655
Putative virulence/resistance : Resistance
Product : cation efflux protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1230
EC number : -
Position : 588388 - 589182 bp
Length : 795 bp
Strand : -
Note : COGs: COG1230 Co/Zn/Cd efflux system component; InterPro IPR006121:IPR002524; KEGG: prw:PsycPRwf_0699 cation efflux protein; PFAM: cation efflux protein; SPTR: Cation efflux protein; PFAM: Cation efflux family

DNA sequence :
ATGAACAAAACCATATTCAATATTACCAAAATGGATTGCCCCAGTGAGGAGCAATTAATCCGTATGAAATTGCAGGATTT
TGATACGGTAAAGTCATTGGAATTTGATATTCCCAATAGGGAATTGAATGTTTATCATAGTGGAAACCCCGAGCCGATTT
TATCGGCTTTGGAAACTTTGAACCTAAATACAACGTTGATTTCAACCGAAGAAACTGACGGAGTTATTGAAACGGATACA
AGCAATAGACAACGGAGGCTACTTTGGACGGTACTGGTTATCAACTTCGTTTTCTTTGGAGTGGAAATGTTGTTCGGTAT
TTTTTCCAACTCAATGGGATTGGTAGCGGATAGCTTGGATATGCTTGCCGATAGTATCGTCTACGCTTTGGCTCTGTTTG
CTGTAGGGGGTACGGTCGCAAGAAAAAACAACATAGCCAAATTTGCAGGGTACTTCCAAATCTTGTTGGCTGTTATCGGT
TTTGTGGAAGTAATAAGACGTTTTTTAGGTTTTGAAAAGATGCCCGATTTTCAAACGATGATTATCGTTTCAGTTTTGGC
ACTAATGGCAAATGTGCTTTGTCTTTACCTGTTACAAAAGAACAAAAGTAAGGAAGCCCACATGCAGGCAAGTATGATTT
TCACATCGAACGATGTCATTATCAATTCGGGCGTTATCGTTGCAGGTCTCTTGGTTCATTGGCTTAATTCAAGCTACCCC
GATTTGATTATCGGAGCAATTGTATTTGTAATTGTGGCAAGAGGGGCATATAGGATATTGAAGTTAGTAGAATAA

Protein sequence :
MNKTIFNITKMDCPSEEQLIRMKLQDFDTVKSLEFDIPNRELNVYHSGNPEPILSALETLNLNTTLISTEETDGVIETDT
SNRQRRLLWTVLVINFVFFGVEMLFGIFSNSMGLVADSLDMLADSIVYALALFAVGGTVARKNNIAKFAGYFQILLAVIG
FVEVIRRFLGFEKMPDFQTMIIVSVLALMANVLCLYLLQKNKSKEAHMQASMIFTSNDVIINSGVIVAGLLVHWLNSSYP
DLIIGAIVFVIVARGAYRILKLVE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ACICU_00235 YP_001844894.1 heavy metal detoxification protein Not tested AbaR20 Protein 2e-49 45
cadA ACN81030.1 Co/Zn/Cd efflux system component Not tested AbaR5 Protein 2e-49 45
cadA ACS32042.1 Co/Zn/Cd efflux system component Not tested AbaR5 Protein 2e-49 45
1_43 CAJ77022.1 Heavy metal detoxification protein Not tested AbaR1 Protein 1e-49 45
1_376 CAJ77095.1 Heavy metal detoxification protein Not tested AbaR1 Protein 1e-49 45
cadA ADZ05770.1 Co/Zn/Cd efflux system component Not tested AbaR11 Protein 1e-49 45
cadA AGK36654.1 Co/Zn/Cd efflux system component Not tested AbaR26 Protein 1e-49 45