Gene Information

Name : Lbys_2837 (Lbys_2837)
Accession : YP_003998852.1
Strain : Leadbetterella byssophila DSM 17132
Genome accession: NC_014655
Putative virulence/resistance : Unknown
Product : riboflavin biosynthesis protein ribd
Function : -
COG functional category : H : Coenzyme transport and metabolism
COG ID : COG0117
EC number : -
Position : 3197793 - 3198761 bp
Length : 969 bp
Strand : -
Note : COGs: COG0117 Pyrimidine deaminase; InterPro IPR002125:IPR002734:IPR004794:IPR016192; KEGG: sli:Slin_2937 riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; PRIAM: Diaminohydroxyph

DNA sequence : 
ATGATGTACATGAAACGCGCCCTTGAATTGGCCGCATTAGGCAGAGAATGGGTTAGTCCTAATCCTATGGTAGGATGCGT
GATTGTGCATAATGATAAAATTATTGGCGAAGGCTTTCACAGAAAATACGGTCAGCCACACGCCGAAGTAAATGCGGTAG
ATTCTGTAGAAGACAAAAGTCTACTTTCGGAATCTACCGTTTATGTTACCTTGGAGCCTTGTGCTCATTTTGGTAAAACT
CCTCCCTGCGCCGAACTACTGATCAAACACAAGGTCAAAAAGGTGGTGGTTTGCAATCTAGATCCCTTCCCACAAGTGGC
CGGCAAAGGAATTACTATGCTTAAGAATGCCGGTATAGATGTGGAAGTAGGATTGCTCCAGGAAGAAGGTGAAGAGCTTA
ATAAAAGATTCTTCAAAAGACATAGAACCGGTCTTCCCTATGTCATCTTGAAATGGGCGGAAAGTAAAGATGGATTTATA
AGTGCCGAAGGAGGGAAACCGATAAAGATTTCCCATCCCATCACAGACATACAAGTGCACAGGTGGAGGGCAGAAGAAGA
CGCAATTTTGATTGGAAAAAATACTGCAGATCTAGATAACCCTCAATTAAACGTCAGGTACTGGACAGAAGATAAACAAC
CCAAGCCTATCATTTTGGGTCAACCCACACGACAGGATCTTCGTGCAAAAGGCGCAAAAATTTTTCCAAACGGAAAGAAT
TTGACTGAAATATTACGCCAACTGGCACAAGACGGAATTCAAAGCATCTTAGTGGAAGGGGGAACAAAAATCCATACCTC
CTTTATAGAAGAAGGCCTCTTTGACGAGATCAGAGTAATTCAGGGCGATATAGAAATTCTTAATGGAGTTAAGGCACCAC
AACTCCCTGATGGTCTGATATTAACCGATCATCATACCTATAGGAACGATCATATAAAAGTTTATCGTTCTATTCCAACC
CTTTCCTAA

Protein sequence : 
MMYMKRALELAALGREWVSPNPMVGCVIVHNDKIIGEGFHRKYGQPHAEVNAVDSVEDKSLLSESTVYVTLEPCAHFGKT
PPCAELLIKHKVKKVVVCNLDPFPQVAGKGITMLKNAGIDVEVGLLQEEGEELNKRFFKRHRTGLPYVILKWAESKDGFI
SAEGGKPIKISHPITDIQVHRWRAEEDAILIGKNTADLDNPQLNVRYWTEDKQPKPIILGQPTRQDLRAKGAKIFPNGKN
LTEILRQLAQDGIQSILVEGGTKIHTSFIEEGLFDEIRVIQGDIEILNGVKAPQLPDGLILTDHHTYRNDHIKVYRSIPT
LS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00289 YP_008207754.1 Pyrimidine deaminase Not tested AbaR25 Protein 7e-34 41
BJAB0868_00293 YP_008211619.1 Pyrimidine deaminase Not tested AbaR26 Protein 7e-34 41