Gene Information

Name : Lbys_2364 (Lbys_2364)
Accession : YP_003998393.1
Strain : Leadbetterella byssophila DSM 17132
Genome accession: NC_014655
Putative virulence/resistance : Virulence
Product : ABC transporter related protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2607453 - 2608118 bp
Length : 666 bp
Strand : -
Note : COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: sli:Slin_2350 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Putative ABC transport sys

DNA sequence : 
ATGATTGAGCTAAAGAATGTAAGTAAATCCTACTTCACGGATGTATTAGAGACGGTGGCTTTGAATGATATTTCTCTGCA
CATCAATGCCGGAGAATTTGTATCCATCATGGGCCCTTCCGGCTGCGGAAAGTCTACTTTATTAAACATGATTGGACTTT
TAGATCTACCTAGTAAAGGAAGTATTAAGATCCATGGAGTGCACCTGCAGGATCATAAGGAAAATGAACTAGCCCGCTTT
AGAAACGAACATCTGGGCTTCATCTTTCAAAGTTTTCATCTGATTTCAGATCTATCTGTTATAGATAATGTGGAATTGCC
ACTGCTTTATAGAGGAGTGAGCACTGCAGAAAGAAAGAGACTGTCAGAGGAAGCATTAGCGCAAGTGGGTTTGAGCAATA
GAAAAGATCATTTTCCTAATCAACTTTCGGGTGGTCAGCGTCAAAGGGTGGCCATAGCCAGAGCTATTGTAGGGAAACCT
ACCATAGTGATGGCAGATGAGCCTACGGGTAATCTGGACTCTGTGCTGGGGAATGAAGTGATGCAACTTCTTTTGGACCT
GAATGAAAAACAAAAGGTGACCATAGTGATGGTGACCCATGATGAGAGTATGGCCAAGAAGACGCACAGGATATTGAGAT
TGTATGACGGAAACCTGGTGAATTAA

Protein sequence : 
MIELKNVSKSYFTDVLETVALNDISLHINAGEFVSIMGPSGCGKSTLLNMIGLLDLPSKGSIKIHGVHLQDHKENELARF
RNEHLGFIFQSFHLISDLSVIDNVELPLLYRGVSTAERKRLSEEALAQVGLSNRKDHFPNQLSGGQRQRVAIARAIVGKP
TIVMADEPTGNLDSVLGNEVMQLLLDLNEKQKVTIVMVTHDESMAKKTHRILRLYDGNLVN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 6e-36 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-30 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-30 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-30 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-30 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lbys_2364 YP_003998393.1 ABC transporter related protein NC_012469.1.7686878. Protein 2e-51 52
Lbys_2364 YP_003998393.1 ABC transporter related protein NC_008702.1.4606598. Protein 5e-40 47
Lbys_2364 YP_003998393.1 ABC transporter related protein CP001581.1.gene798.p Protein 1e-43 46
Lbys_2364 YP_003998393.1 ABC transporter related protein CP001581.1.gene598.p Protein 5e-37 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lbys_2364 YP_003998393.1 ABC transporter related protein VFG0869 Protein 1e-19 43