Gene Information

Name : Lbys_1633 (Lbys_1633)
Accession : YP_003997694.1
Strain : Leadbetterella byssophila DSM 17132
Genome accession: NC_014655
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1706837 - 1707520 bp
Length : 684 bp
Strand : -
Note : COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: dfe:Dfer_0453 two component transcriptional regulator, winged helix family; PFAM: response regulator rec

DNA sequence : 
ATGCAGGGCTTAAAGATATTACTCATTGAAGATGAGGTAAAAACCTTGAATCTAATTAAGGAGGGATTAGAGGAGAATAA
TGCGCAAGTGGATATAGCCTATGATGGACAAATGGGCTTAACTCTGGCAGAAAGGAATGAGTATTCTCTTATTATTAGTG
ATATTATTTTACCGGAAATCAACGGTTTAACCCTCTGTAAAACCTTAAGAGACAATGGAAATCATACCCCAATCCTGTTA
TTGACGGCTTTGGGCACTACAGAAGACATCATTACAGGATTAGATTCCGGTGCAGATGATTATCTTAGTAAACCATTTGA
ATTTTCAGAATTGAGGGCTAGGATTCGTGCCTTAACCCGTAGAGGAAATGCGGTGATTCAAAAATCGAATATACTTAGGG
TGGCGGACCTAGAACTGAACGTAGATACCAAGGCCGTAAAGAGAGGAGATAAAGAGATTACATTAACGGCAAAGGAGTTC
AGCCTATTGGAATTCTTTATGAGTAATGTGGGTCGTGTGATTTCTAAGGTGGAATTAGCTGAAAAGATCTGGGATATTAC
TTTTGATACAGGCACAAATGTCATCGAAGTATATGTGAATTTCCTTCGCAAAAAAATAGACAAGGACTTTGATGTCAAAC
TGATTCACACCCAGATAGGCATGGGATATGTAATGAAATGTTGA

Protein sequence : 
MQGLKILLIEDEVKTLNLIKEGLEENNAQVDIAYDGQMGLTLAERNEYSLIISDIILPEINGLTLCKTLRDNGNHTPILL
LTALGTTEDIITGLDSGADDYLSKPFEFSELRARIRALTRRGNAVIQKSNILRVADLELNVDTKAVKRGDKEITLTAKEF
SLLEFFMSNVGRVISKVELAEKIWDITFDTGTNVIEVYVNFLRKKIDKDFDVKLIHTQIGMGYVMKC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-40 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-40 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lbys_1633 YP_003997694.1 winged helix family two component transcriptional regulator BAC0111 Protein 4e-47 50
Lbys_1633 YP_003997694.1 winged helix family two component transcriptional regulator BAC0347 Protein 8e-43 47
Lbys_1633 YP_003997694.1 winged helix family two component transcriptional regulator BAC0125 Protein 2e-42 46
Lbys_1633 YP_003997694.1 winged helix family two component transcriptional regulator BAC0083 Protein 2e-41 45
Lbys_1633 YP_003997694.1 winged helix family two component transcriptional regulator BAC0638 Protein 7e-36 44
Lbys_1633 YP_003997694.1 winged helix family two component transcriptional regulator BAC0197 Protein 7e-41 44
Lbys_1633 YP_003997694.1 winged helix family two component transcriptional regulator BAC0308 Protein 1e-41 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lbys_1633 YP_003997694.1 winged helix family two component transcriptional regulator VFG0596 Protein 2e-40 42