Gene Information

Name : Lbys_1382 (Lbys_1382)
Accession : YP_003997451.1
Strain : Leadbetterella byssophila DSM 17132
Genome accession: NC_014655
Putative virulence/resistance : Virulence
Product : RNA-directed DNA polymerase (reverse transcriptase)
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3344
EC number : -
Position : 1432343 - 1433575 bp
Length : 1233 bp
Strand : -
Note : COGs: COG3344 RetroN-type reverse transcriptase; InterPro IPR000477:IPR013597:IPR000123; KEGG: zpr:ZPR_3982 RNA-directed DNA polymerase (reverse transcriptase); PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific d

DNA sequence :
ATGATTGATTACTATGAAACAAAGCAACATCCAATCACCAAGAAAATGGTGTTGGATGCTTACCGAAAAGTACGGGCAAA
TAAGGGGAGTGCCGGGATTGATACGCAGAGTCTGGAACAGTTTGAGGAACGGTTAGCGGATAATCTATATAAGATCTGGA
ACCGTATGACCTCGGGCAGTTACCATCCCAAAGCAGTAAGGGAGGTGCAAATTCCCAAGAAAAGTGGAGGTTATCGAGGA
CTCGGAATACCTACGGTGTCAGACCGGGTAGCCCAACAGGTTGTCAAAAGCTATCTTGAACCCAAGGTGGAGCCGAGCTT
CCATCAGGACAGCTACGGTTATCGTCCGAACAAGAGTGCGCATGATGCGCTGGCTAAAACGGTGCGGAACTGTGGGTACT
ACAGCTGGGTTGTGGACCTGGACATCCGTGGCTTCTTCGATAACATCGATCACGAACTACTCATGAAAGCCGTGCGTGTA
TATACCGATGAGAAATGGATAATCATGTACATCGAACGCTGGCTTGAAGTGGGCGTAGTGCGTGAGGGTAAAGTGCACAA
ACGAGAAAAAGGGACACCTCAGGGTGGAGTGATAAGTCCCCTGCTGGCCAACATCTTCCTGCACTTCGTTTTCGACAAAT
GGATGGAAAAGCATCACGGCAATATGCCTTTTGAAAGGTATTGCGATGACGCCATCATCCACTGTACCACTTGGAATCAG
GCTGTATTTATCAAGAATGCGGTAACCAAGCGTATGAAGGAGTGCAAACTTGAACTCAACAGCGAGAAAACAAAAATCGT
ATACTGCAAAAACTCGATCCACAGAGAGTCAAATCCAGTACCGGTTTCGTTCACCTTCCTTGGTCATACATTTCGACCCT
TGGGCAGGCCAACCAAAAACGGCTGGAAACTTACGTATTTTCCGTGTATGAGTCAGGATGCGAAGAAATCCGTTCGAGAG
AAAGTGAAGAGTGTAGTGAACAGGCGTTTCATGGGAAAGCTGCAAGACATCGCCCAACGCCTGAACGCAATGGCCAGAGG
TTGGATTAATTACTACTGTGTGTATTCAAGATGGACGGTGTACGGACTTTGGTATTGGATTAACCTCAAGTTGGTACGAT
GGGTTATGAGACGTAAAAAGATGGGAAGAAGGAGAGCACATCAGTGGTTGAGGAAAATCTATAACCAGAACCCAAAACTA
TTCATCCACTGGACGCTTGCCAGACCGTACTAA

Protein sequence :
MIDYYETKQHPITKKMVLDAYRKVRANKGSAGIDTQSLEQFEERLADNLYKIWNRMTSGSYHPKAVREVQIPKKSGGYRG
LGIPTVSDRVAQQVVKSYLEPKVEPSFHQDSYGYRPNKSAHDALAKTVRNCGYYSWVVDLDIRGFFDNIDHELLMKAVRV
YTDEKWIIMYIERWLEVGVVREGKVHKREKGTPQGGVISPLLANIFLHFVFDKWMEKHHGNMPFERYCDDAIIHCTTWNQ
AVFIKNAVTKRMKECKLELNSEKTKIVYCKNSIHRESNPVPVSFTFLGHTFRPLGRPTKNGWKLTYFPCMSQDAKKSVRE
KVKSVVNRRFMGKLQDIAQRLNAMARGWINYYCVYSRWTVYGLWYWINLKLVRWVMRRKKMGRRRAHQWLRKIYNQNPKL
FIHWTLARPY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13526.1 reverse transcriptase Not tested PAGI-7 Protein 3e-82 48
unnamed CAD33771.1 putative reverse transcriptase Not tested PAI I 536 Protein 1e-71 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lbys_1382 YP_003997451.1 RNA-directed DNA polymerase (reverse transcriptase) VFG1512 Protein 6e-72 43