Gene Information

Name : Lbys_1108 (Lbys_1108)
Accession : YP_003997183.1
Strain : Leadbetterella byssophila DSM 17132
Genome accession: NC_014655
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1146231 - 1146923 bp
Length : 693 bp
Strand : -
Note : COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: cpi:Cpin_3739 two component transcriptional regulator, winged helix family; PFAM: response regulator rec

DNA sequence : 
ATGAGTGATATCAAGAAAATTTTGATTGTGGAGGATGATCTCCGGATAGCCCAGAATATTAGCAAAGGGCTAATGGAGAA
GGGTTTTGACACCGAGATAGCCTATGATGGAAAGATAGGTGTAAAACTGGCCATATCAAATCCTTATGATTTGATACTAT
TGGACTTAAACTTACCGGAGTTAAACGGTTACGAGGTATGTTCAGAGGTGAGGAAAAGGAAACCTTCTATTCCTATCATT
ATGCTTACGGCTTTAGGGGAGACGGAAGATAAGATAGAGGGATTTGAACGTGGAGCTGACGATTATTTGGTAAAACCCTT
TGACTTCAGAGAACTTTTGGCCAGGATAAATGTTTTTATCAAGAGAAATGCCGGAGCTGGCGCCAGCCAGGAAAATACCT
TGAAGATCGCTAATTTGGTGATGGATTTAGACGGGAAAACCGTGATGAGAGATGGGGTAAAGATTGATTTGACTCCTAAG
GAGTTTTCTCTATTAGAATATCTCATCAAAAATAAGGGTAAAGTAGTGTCTAAAGCTGAGATTTCATCCGCGCTTTGGGA
ACCGAATAATCAGCAAAGTTTGAATGTGGTGGAAGTGTATATTAATTTCTTAAGAAAGAAGATAGATAAGGACTTCATAC
CGAAGTTGATTCACACCAAGACCGGTATGGGTTATATTATAGCAGAGGAATAA

Protein sequence : 
MSDIKKILIVEDDLRIAQNISKGLMEKGFDTEIAYDGKIGVKLAISNPYDLILLDLNLPELNGYEVCSEVRKRKPSIPII
MLTALGETEDKIEGFERGADDYLVKPFDFRELLARINVFIKRNAGAGASQENTLKIANLVMDLDGKTVMRDGVKIDLTPK
EFSLLEYLIKNKGKVVSKAEISSALWEPNNQQSLNVVEVYINFLRKKIDKDFIPKLIHTKTGMGYIIAEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-27 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lbys_1108 YP_003997183.1 winged helix family two component transcriptional regulator BAC0125 Protein 6e-37 44
Lbys_1108 YP_003997183.1 winged helix family two component transcriptional regulator BAC0111 Protein 6e-39 44
Lbys_1108 YP_003997183.1 winged helix family two component transcriptional regulator BAC0347 Protein 6e-34 43
Lbys_1108 YP_003997183.1 winged helix family two component transcriptional regulator BAC0197 Protein 5e-31 43
Lbys_1108 YP_003997183.1 winged helix family two component transcriptional regulator BAC0638 Protein 3e-29 43
Lbys_1108 YP_003997183.1 winged helix family two component transcriptional regulator AE015929.1.gene1106. Protein 3e-24 42
Lbys_1108 YP_003997183.1 winged helix family two component transcriptional regulator BAC0308 Protein 2e-32 42
Lbys_1108 YP_003997183.1 winged helix family two component transcriptional regulator BAC0083 Protein 1e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lbys_1108 YP_003997183.1 winged helix family two component transcriptional regulator VFG0596 Protein 6e-28 42