Gene Information

Name : Halsa_0351 (Halsa_0351)
Accession : YP_003994180.1
Strain : Halanaerobium hydrogeniformans sapolanicus
Genome accession: NC_014654
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : S : Function unknown
COG ID : COG1576
EC number : -
Position : 410350 - 410829 bp
Length : 480 bp
Strand : +
Note : PFAM: protein of unknown function DUF163; KEGG: hor:Hore_20240 conserved hypothetical protein TIGR00246

DNA sequence :
ATGAAGATCAATATAATTGCTGTAGGAAAAATGAGTTCTGATTTTTTGGAACCTGCTCTGCTTGAATTTCAAAAAAGATT
GAAGCATTATTGTGATTTAAATATTATCGAGGTAGAGGCAGAAAAACTACCCAAAAATCCAGCTGCTAAAGATATAGAAA
ATCTTCAGGCTCTTGAAGGGGAAAGAATTTTAAAGAAGATAGCAGAAAGGTCCTATGTTTTCGCACTTGATATCAAGGGA
AAACCGATGACTTCCAAAGGATTTGCCAGATCACTTAACAATCTCAAACTGAGAGGTTATAGCTCATTTACTTTTTTAAT
TGGGGGAGCTACAGGTTTAAGTGATTTCGTTTTAAAAGAGGCAGATTACAGGATCTCTTTATCCCATATGACCTTTACCC
ATCAGATGGTTCGTTTGATATTATTAGAACAGATTTATAGGGCTTTTAAGATCAACAATAATGAGCCCTATCATCTATAA

Protein sequence :
MKINIIAVGKMSSDFLEPALLEFQKRLKHYCDLNIIEVEAEKLPKNPAAKDIENLQALEGERILKKIAERSYVFALDIKG
KPMTSKGFARSLNNLKLRGYSSFTFLIGGATGLSDFVLKEADYRISLSHMTFTHQMVRLILLEQIYRAFKINNNEPYHL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-35 49
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 9e-35 49
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 9e-35 49
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 9e-35 49
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 9e-35 49
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 9e-35 49
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 9e-35 49
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 9e-35 49
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 1e-34 49
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 9e-35 49
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 9e-35 49
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 1e-34 49
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 2e-35 49
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 9e-35 49
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 8e-36 48
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 9e-34 48
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 3e-34 46
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 2e-30 45