Gene Information

Name : Halsa_0290 (Halsa_0290)
Accession : YP_003994121.1
Strain : Halanaerobium hydrogeniformans sapolanicus
Genome accession: NC_014654
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 346746 - 347390 bp
Length : 645 bp
Strand : +
Note : KEGG: hor:Hore_23250 ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGGCTCTGGTTAAATTAATCGAATTAGAAAAAATATATCAGCAGGGTAAAATTGCCGTCCCGGCTTTAAGGGGAATAGA
TATGGAAATAGAGTCTGGAGAGTTTACAACTATTTTTGGTCCTTCTGGTTCAGGAAAAACAACCCTGCTTAATATGATCG
GCTGTCTGGATAAGTCTACTTCGGGAGAGATTATCTTTGCCGGTAATTCCATTAATCAGCTAAATAGAAACGAGTTAGCT
GATATAAGACGCTATAATCTAGGGTTTATCTTTCAAAGCTATAACCTTATTCCGGTTTTAACTGCTTTTGAAAATGTAGA
ATTTGCGATACGATTGATCGATAAACATACGAAAAAAGAGCGCCGCGAAAAAGTAATGCATATTTTAGATGAGGTTGGCC
TGGCAGATATGGCTTATAGAAAGCCAAATGAATTATCAGGTGGACAAAAACAGAGGGTAGCGATCGCCAGAGCTTTAATC
AAAGAACCAAAATTGGTTCTAGCAGATGAGCCAACTGCCAACCTGGATTCTGAAACCAGTGAAGAGGTGCTTGAGATAAT
GAAAAAAATGAATAAAGAATTAAATACTACCTTTATTTTTCTACTCATGATCCTCAGGTTATGGAATATGCCAAAAGATT
GGTAG

Protein sequence : 
MALVKLIELEKIYQQGKIAVPALRGIDMEIESGEFTTIFGPSGSGKTTLLNMIGCLDKSTSGEIIFAGNSINQLNRNELA
DIRRYNLGFIFQSYNLIPVLTAFENVEFAIRLIDKHTKKERREKVMHILDEVGLADMAYRKPNELSGGQKQRVAIARALI
KEPKLVLADEPTANLDSETSEEVLEIMKKMNKELNTTFIFLLMILRLWNMPKDW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-31 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-30 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-30 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-30 42
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 6e-24 42
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 1e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Halsa_0290 YP_003994121.1 ABC transporter CP001581.1.gene598.p Protein 3e-36 44
Halsa_0290 YP_003994121.1 ABC transporter NC_008702.1.4606598. Protein 7e-36 44
Halsa_0290 YP_003994121.1 ABC transporter NC_012469.1.7686878. Protein 1e-35 43
Halsa_0290 YP_003994121.1 ABC transporter CP001581.1.gene798.p Protein 3e-33 42
Halsa_0290 YP_003994121.1 ABC transporter NC_012469.1.7685735. Protein 4e-30 41