Gene Information

Name : Calhy_0462 (Calhy_0462)
Accession : YP_003991576.1
Strain : Caldicellulosiruptor hydrothermalis 108
Genome accession: NC_014652
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 507226 - 507903 bp
Length : 678 bp
Strand : +
Note : KEGG: csc:Csac_2447 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGATCGAACTTTATGATATCTACAAAATCTACAAAATGGGCGAAAATGAGGTGTATGCTTTAAACGGTATTAACCTGAA
AATCAATGTTCACGAGTTTGTTGCAATAGTGGGTCCATCCGGCTCAGGAAAATCAACTCTTATGAACATCATAGGCTGTC
TTGACACACCAACATCTGGCACATACATACTGGATGGTCATGAAGTCAGCAGGCTAAATGACAACCAGCTTGCAGAGATT
CGAAACAGCAAGATAGGCTTTGTGTTTCAAAACTTTAACTTGATACCACAGCTCACAGCTCTTGAAAACGTTGAGCTTCC
TTTAATCTACAAAGGTGTTCCGGCCTCTATGCGTCACAAGCTTGCAAAAGAAGCTCTTGCAAGGGTTAGCTTGGAACATA
GAATGCACCACAGACCAAGAGAGCTATCTGGCGGTCAGCAGCAGAGAGTTGCAATTGCAAGGGCGCTTGTCACAAACCCA
GCAATAATTCTTGCTGATGAGCCAACAGGAAACTTGGACTCAAAGTCAGGTGCTGAGATAATTCAAATATTTAAGGAACT
TCATGCACAGGGTAGCACAATTGTTTTAATCACACACGACAACAACATAGCAGCTCAGGCAAGAAGAATTGTGCGGATTC
AGGATGGTCAAATAATAGAAGACAAGGAGGTGAGCTGA

Protein sequence : 
MIELYDIYKIYKMGENEVYALNGINLKINVHEFVAIVGPSGSGKSTLMNIIGCLDTPTSGTYILDGHEVSRLNDNQLAEI
RNSKIGFVFQNFNLIPQLTALENVELPLIYKGVPASMRHKLAKEALARVSLEHRMHHRPRELSGGQQQRVAIARALVTNP
AIILADEPTGNLDSKSGAEIIQIFKELHAQGSTIVLITHDNNIAAQARRIVRIQDGQIIEDKEVS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 3e-37 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-32 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-33 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-33 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-33 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Calhy_0462 YP_003991576.1 ABC transporter-like protein NC_012469.1.7686878. Protein 1e-61 60
Calhy_0462 YP_003991576.1 ABC transporter-like protein CP001581.1.gene598.p Protein 9e-42 49
Calhy_0462 YP_003991576.1 ABC transporter-like protein CP001581.1.gene798.p Protein 5e-41 48
Calhy_0462 YP_003991576.1 ABC transporter-like protein NC_008702.1.4606598. Protein 2e-49 48