Gene Information

Name : Calhy_2461 (Calhy_2461)
Accession : YP_003993527.1
Strain : Caldicellulosiruptor hydrothermalis 108
Genome accession: NC_014652
Putative virulence/resistance : Unknown
Product : alpha amylase catalytic subunit
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG0366
EC number : -
Position : 2579513 - 2581186 bp
Length : 1674 bp
Strand : +
Note : KEGG: ate:Athe_0165 alpha amylase catalytic region; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain

DNA sequence :
ATGGACTTGCACAAAAAGTGGTGGAAGGAAGCTGTTGTATATCAAATCTACCCAAGAAGCTTTTATGACTCAAACGGTGA
TGGAATTGGAGATTTGTCAGGAATAATAGAAAAACTTGATTATCTTCAAGAGCTTGGAGTAGACGTCATTTGGCTAAATC
CCATCTACAAATCTCCAAACGCAGACAATGGTTATGACATCAGCGATTACTATGACATCATGGATGAGTTTGGTACAATG
GAAGATTTTGATAGGCTCTTGAATGAAGCCCACAAAAGAGGAATTAAAATTGTAATGGACCTTGTAGTGAACCACACATC
TGATGAACACAAATGGTTTCAAGAGTCCAGAAAATCAAAAGACAGTCCTTACAGAGATTTTTATTTCTGGCGGCCTGGCA
AAAATGGAGGGCCTCCTAATAACTGGACATCCTTTTTCAGCGGCCCTGCTTGGGAATACGATGAGCTGACAGGAGAATAT
TATCTTCACCTTTTTGCTGTAAAGCAGCCAGACCTCAATTGGGACAATCCAAAAGTCAGACAAGAAATTTACAAAATGAT
GAAGTGGTGGCTTGACAAAGGCATAGATGGGTTTAGAATGGATGTAATAAACCTCATTTCAAAAGTTGAAGGACTGCCAG
ATGACCCAGATGAAAATCAAGGAGGTTTGATTGGTTTTAAATACTATGCCAACGGTCCAAGGGTGCATGAATATCTTCAG
GAAATGAACAGAGAAGTGCTTTCTAAATACGACATCATGACAGTGGGAGAGACTCCATTTGTAACTCCTGAGATTGCAAA
GCTGTATGTAGAGTATGACAGAAACGAACTGAACATGGTTTTCCATTTTGAGCACATGGATATGGACTGTAGCGGCAGCA
AGTGGAATATAAAACCCTGGAAACTGACTGATTTGAAAAAGATAATGTACAAGTGGTATTTGGCTTTAAAAGACAAGGGC
TGGAATTCACTTTACCTTAACAACCATGACCAGCCAAGGATGGTCTCACGCTTTGGAAACGACAAAGAGTATAGGGTTGA
GTCTGCAAAGCTTTTGGCAACCCTGCTTCACACATGGCAGGGAACTCCTTATATTTACCAGGGCGAAGAGATTGGTATGA
CAAACTGCAAGTTTGAAAGTATTGATGAGTTCAGAGACATTGAAACACTCAACTGGTACAAAGAGATGAAAAAACTTGGA
AAATCAGACGAAGAGCTTTTAGAAATTTTAAACAAAAGAAGCAGAGACCATGCACGAACACCAATGCAGTGGGATGATTC
TGAAAACGCAGGATTTACAAAAGGCACCCCATGGATAAAGGTAAATCCAAATTATAAGGAAATAAATGTTAAAAAAGCTT
TAGAAGATAAAAATTCGGTGTTTTACTACTATAAGAAATTGATTGAACTTAGAAAAAAACATCCTGTCATTGTATATGGT
GATGTACAAATGCTTTATGAGGACGATGAAAAGATCTTTGCATATACAAGAAACTATGAAGATGAAAGGCTTCTTGTTGT
CATGAACTTTTCTGAAGCAGAAAGTGAGTTTTTAGCACCAAAAGAAATATTCACTCAAAAACCTGAACTTTTGATAAGTA
ACTATGAAGTAGATGATAACATTCAAGAAAAAATTGTTTTAAAACCATATGAAGCAAGGGTATATAAAATATAA

Protein sequence :
MDLHKKWWKEAVVYQIYPRSFYDSNGDGIGDLSGIIEKLDYLQELGVDVIWLNPIYKSPNADNGYDISDYYDIMDEFGTM
EDFDRLLNEAHKRGIKIVMDLVVNHTSDEHKWFQESRKSKDSPYRDFYFWRPGKNGGPPNNWTSFFSGPAWEYDELTGEY
YLHLFAVKQPDLNWDNPKVRQEIYKMMKWWLDKGIDGFRMDVINLISKVEGLPDDPDENQGGLIGFKYYANGPRVHEYLQ
EMNREVLSKYDIMTVGETPFVTPEIAKLYVEYDRNELNMVFHFEHMDMDCSGSKWNIKPWKLTDLKKIMYKWYLALKDKG
WNSLYLNNHDQPRMVSRFGNDKEYRVESAKLLATLLHTWQGTPYIYQGEEIGMTNCKFESIDEFRDIETLNWYKEMKKLG
KSDEELLEILNKRSRDHARTPMQWDDSENAGFTKGTPWIKVNPNYKEINVKKALEDKNSVFYYYKKLIELRKKHPVIVYG
DVQMLYEDDEKIFAYTRNYEDERLLVVMNFSEAESEFLAPKEIFTQKPELLISNYEVDDNIQEKIVLKPYEARVYKI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
malL YP_251987.1 oligosaccharide alpha-1,6-glucosidase Not tested SCCmec Protein 3e-148 58