Gene Information

Name : GY4MC1_0078 (GY4MC1_0078)
Accession : YP_003987545.1
Strain : Geobacillus sp. Y4.1MC1
Genome accession: NC_014650
Putative virulence/resistance : Virulence
Product : lysyl-tRNA synthetase
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG1190
EC number : -
Position : 89437 - 90921 bp
Length : 1485 bp
Strand : +
Note : KEGG: gwc:GWCH70_0078 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type

DNA sequence :
ATGAGTCATGAAGAACTTAACGATCAATTGCGAGTCCGCAGGGAAAAATTACATAAATTAAGAGAAATGGGAATTGATCC
GTTTGGCAAACGGTTTGAACGAACACATAAAGCACAAGAACTGTTTGATTTATACGGTGATTTATCAAAAGAAGAACTGG
AAGAAAAACAAATAAAAGTTGCTGTTGCCGGGCGCATTATGACAAAACGGGGCAAAGGTAAAGCGGGATTCGCCCATATT
CAAGACGTCACTGGCCAAATTCAAATTTACGTTCGTGAAGATGCGGTCGGCCCAGAGCAATACGAGCTTTTCAAAACTTC
TGATTTAGGCGATATTATCGGTGTTTGCGGAACGGTATTTAAAACAAAAGTCGGAGAGCTGTCCATTAAAGTATCCTCTT
ATGAATTTTTAACAAAAGCGCTGCGCCCGCTTCCGGAAAAATACCATGGGCTAAAAGACATCGAACAGCGTTACCGACAA
CGGTATTTAGATTTAATTATGAATCCGGACAGCAAAAATACGTTTATCACACGCAGCCGGATTATTCAATCGATGCGCCG
TTACTTAGATAGCCATGGCTATTTAGAAGTCGAAACGCCGATGATGCACAACATTGCCGGAGGAGCGGCGGCTCGTCCGT
TTATCACTCACCATAACGCGTTGGATATGCCGTTATATATGCGGATCGCGATCGAGCTTCATTTGAAACGTTTAATTGTC
GGCGGATTAGAAAAAGTTTATGAGATAGGCCGTGTGTTCCGTAATGAAGGAGTTTCTACACGCCATAACCCAGAATTTAC
GATGCTTGAGCTGTACGAAGCGTACGCGGATTTCCGCGATATTATGACATTGACGGAAAACTTAATTGCCCACATCGCCC
AAGAAGTGTTAGGGACGACAAAAATCCAGTATGGAGAGCATAAGGTTGATTTAACTCCTGAATGGAAACGACTTCATATG
GTAGATGCGATTAAAGAATATGTGGGCGTCGATTTTTGGAAACAAATGAGCGATGAAGAAGCTAGGGAATTGGCAAAAGA
GCATGGTGTGGAAATAGCCCCGCATATGACGTTTGGCCATATTGTGAATGAGTTTTTTGAGCAGAAAGTAGAGGACAAGC
TTATTCAGCCAACATTTATTTATGGACATCCGGTGGAAATCTCGCCGTTAGCGAAGAAAAATCCAGACGATCCGCGCTTT
ACAGACCGCTTTGAATTGTTTATCGTCGGTCGTGAGCATGCAAATGCATTTACCGAATTAAATGATCCGATTGACCAGCG
TGAGCGCTTTGAAGCACAGCTGAAAGAGCGGGAGCAGGGAAATGACGAAGCCCACGAGATGGACGAAGACTTCATCGAAG
CGCTTGAATATGGAATGCCACCAACGGGTGGTTTGGGCATTGGTGTTGACCGACTTGTTATGCTATTGACAAATTCACCG
TCTATTCGTGATGTGTTGCTATTTCCACAAATGCGTAACAAATAA

Protein sequence :
MSHEELNDQLRVRREKLHKLREMGIDPFGKRFERTHKAQELFDLYGDLSKEELEEKQIKVAVAGRIMTKRGKGKAGFAHI
QDVTGQIQIYVREDAVGPEQYELFKTSDLGDIIGVCGTVFKTKVGELSIKVSSYEFLTKALRPLPEKYHGLKDIEQRYRQ
RYLDLIMNPDSKNTFITRSRIIQSMRRYLDSHGYLEVETPMMHNIAGGAAARPFITHHNALDMPLYMRIAIELHLKRLIV
GGLEKVYEIGRVFRNEGVSTRHNPEFTMLELYEAYADFRDIMTLTENLIAHIAQEVLGTTKIQYGEHKVDLTPEWKRLHM
VDAIKEYVGVDFWKQMSDEEARELAKEHGVEIAPHMTFGHIVNEFFEQKVEDKLIQPTFIYGHPVEISPLAKKNPDDPRF
TDRFELFIVGREHANAFTELNDPIDQRERFEAQLKEREQGNDEAHEMDEDFIEALEYGMPPTGGLGIGVDRLVMLLTNSP
SIRDVLLFPQMRNK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD66193.1 putative lysil-tRNA synthetase LysU Not tested PAI III 536 Protein 2e-124 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GY4MC1_0078 YP_003987545.1 lysyl-tRNA synthetase VFG1668 Protein 9e-125 52