Gene Information

Name : GY4MC1_2685 (GY4MC1_2685)
Accession : YP_003989992.1
Strain : Geobacillus sp. Y4.1MC1
Genome accession: NC_014650
Putative virulence/resistance : Virulence
Product : ATPase, FliI/YscN family
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : -
Position : 2677263 - 2678543 bp
Length : 1281 bp
Strand : -
Note : TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; KEGG: gwc:GWCH70_1114 ATPase, FliI/YscN family; SMART: ATPase AAA

DNA sequence :
ATGGATTCATATAAACGGTTTGGCAAAGTTTCGCGGGTTATTGGTTTAATGATAGAAGCGAAAGGACCAGAAAGCTCGGT
CGGCGATATTTGCTATATTCATACCGGAAGCGGAAAGCAAAAACAAATGATTGCCGCAGAAGTCGTTGGATTTAAAGAGC
AGCATGTATTGTTAATGCCGTTTTCGACCGTTCAACATATTTCACCGGGATGCATTGTCGAAGCGACTGGGAAGCCGTTA
CAAATCCGTGTTGGTTTTCCATTAATTGGAAAGGTGCTGGATTCACTCGGCTATCCTCTCGATGGCAGCCCGCTGTCCAA
AGGATTGCAGCCAATTTCGATTGAGCGCAATCCGCCCAATCCGCTCGCAAGACCGCCGATCAGCGAACCGATCGAAGTGG
GCGTTCGTGTCATTGACAGTTTGCTTACGGTTGGCAAAGGGCAGCGCGTCGGAATTTTTGCCGGTTCGGGAGTCGGAAAA
AGCACATTGATGGGAATGATTGCACGCCATACGAACGCGGACATCAATGTGATCGCGTTGATCGGCGAGCGTGGGCGCGA
AGTCCGCGAATTTATCGAACGAGACCTCGGTCCTGAAGGATTGGCGCGCTCCATCGTTGTCGTTGCGACTTCCGATCAGC
CAGCATTGATGCGGGTGAAAGGGGCGTACACCGCCACGGCGATTGCCGAATATTTCCGCGACCAAGGGATGGATGTCATG
TTTATGATGGACTCGGTCACACGCGTCGCGATGGCACAGCGGGAAATTGGCCTAGCGATCGGCGAACCGCCGACAACAAA
AGGATATACACCGTCCGTGTTTGCGATATTGCCGAAACTGCTGGAACGCACCGGAACAAACGCCTGCGGCACGATCACCG
CGTTTTATACGGTGCTTGTCGACGGTGACGATATGAATGAACCGATCGCCGACACAGTGCGCGGCATTTTGGACGGACAT
TTCGTTCTTGAACGCAGTTTAGCCAATAAAGGGCAGTATCCGGCGATTAACGTATTAAAAAGCGTTAGCCGCGTGATGAA
TCACATTATTTCTCCAGAGCACCGGCAAGCGGCGGATAAGCTCCGCCAGCTTCTATCCACTTATATTAATTCGGAAGACT
TAATCAATATAGGGGCGTACAAGCGGGGATCGTCAAAAGAAATTGATGAAGCGATCCGCTATTACCCGGAAATCATTTCT
TTTTGCAAACAAGATATTGATGAGAAAGCGACAAAAGACGAAAGCATTGAGACGCTACTTCGTTTAATGCAAGCAGGGTG
A

Protein sequence :
MDSYKRFGKVSRVIGLMIEAKGPESSVGDICYIHTGSGKQKQMIAAEVVGFKEQHVLLMPFSTVQHISPGCIVEATGKPL
QIRVGFPLIGKVLDSLGYPLDGSPLSKGLQPISIERNPPNPLARPPISEPIEVGVRVIDSLLTVGKGQRVGIFAGSGVGK
STLMGMIARHTNADINVIALIGERGREVREFIERDLGPEGLARSIVVVATSDQPALMRVKGAYTATAIAEYFRDQGMDVM
FMMDSVTRVAMAQREIGLAIGEPPTTKGYTPSVFAILPKLLERTGTNACGTITAFYTVLVDGDDMNEPIADTVRGILDGH
FVLERSLANKGQYPAINVLKSVSRVMNHIISPEHRQAADKLRQLLSTYINSEDLINIGAYKRGSSKEIDEAIRYYPEIIS
FCKQDIDEKATKDESIETLLRLMQAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-100 53
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-100 53
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-100 52
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-101 52
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 4e-100 52
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 3e-101 52
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 2e-101 52
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 2e-101 52
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-100 52
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 1e-89 51
lscN AAO18044.1 LscN Virulence TTSS locus Protein 7e-97 50
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 1e-83 49
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 1e-83 49
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 3e-87 48
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 5e-87 48
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-87 48
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 1e-87 48
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 1e-87 48
escN CAC81862.1 EscN protein Virulence LEE II Protein 3e-82 47
escN CAI43874.1 EscN protein Virulence LEE Protein 1e-82 47
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 3e-82 47
escN YP_003223475.1 translocator EscN Virulence LEE Protein 2e-82 47
escN AAC31513.1 L0034 Virulence LEE Protein 3e-82 46
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 3e-82 46
escN NP_290268.1 hypothetical protein Virulence LEE Protein 4e-82 46
ECs4568 NP_312595.1 EscN Virulence LEE Protein 4e-82 46
escN YP_003236088.1 translocator EscN Virulence LEE Protein 1e-82 46
escN AAC38383.1 EscN Virulence LEE Protein 3e-82 46
escN AAK26715.1 EscN Virulence LEE Protein 8e-82 46
escN AAL57542.1 EscN Virulence LEE Protein 8e-82 46
unnamed AAL06369.1 EscN Virulence LEE Protein 2e-81 46
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 5e-73 45
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 9e-77 44
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 9e-77 44
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 2e-73 43
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 7e-75 43
spaI NP_806497.1 ATP synthase SpaL Virulence SPI-1 Protein 3e-72 43
invC NP_461815.1 ATP synthase SpaL Virulence SPI-1 Protein 3e-72 43
invC YP_217813.1 ATP synthase SpaL Virulence SPI-1 Protein 3e-72 43
spaI NP_457288.1 secretory apparatus ATP synthase (associated with virulence) Virulence SPI-1 Protein 3e-72 43
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 3e-76 43
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 3e-71 42
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 3e-71 42
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 2e-75 42
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 4e-76 42
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 4e-75 42
ysaN AAS66842.1 YsaN Not tested SSR-1 Protein 1e-68 42
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 8e-83 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GY4MC1_2685 YP_003989992.1 ATPase, FliI/YscN family VFG2144 Protein 1e-103 54
GY4MC1_2685 YP_003989992.1 ATPase, FliI/YscN family VFG0390 Protein 1e-99 53
GY4MC1_2685 YP_003989992.1 ATPase, FliI/YscN family VFG0048 Protein 9e-97 52
GY4MC1_2685 YP_003989992.1 ATPase, FliI/YscN family VFG0192 Protein 9e-98 51
GY4MC1_2685 YP_003989992.1 ATPase, FliI/YscN family VFG2499 Protein 1e-91 51
GY4MC1_2685 YP_003989992.1 ATPase, FliI/YscN family VFG1254 Protein 4e-99 50
GY4MC1_2685 YP_003989992.1 ATPase, FliI/YscN family VFG0515 Protein 2e-87 48
GY4MC1_2685 YP_003989992.1 ATPase, FliI/YscN family VFG2331 Protein 1e-90 48
GY4MC1_2685 YP_003989992.1 ATPase, FliI/YscN family VFG0812 Protein 2e-82 46
GY4MC1_2685 YP_003989992.1 ATPase, FliI/YscN family VFG0730 Protein 2e-82 46
GY4MC1_2685 YP_003989992.1 ATPase, FliI/YscN family VFG0555 Protein 1e-72 43
GY4MC1_2685 YP_003989992.1 ATPase, FliI/YscN family VFG1008 Protein 2e-70 43
GY4MC1_2685 YP_003989992.1 ATPase, FliI/YscN family VFG2459 Protein 7e-74 42
GY4MC1_2685 YP_003989992.1 ATPase, FliI/YscN family VFG1778 Protein 3e-71 42