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Name : smpB (HMPREF0421_20928) Accession : YP_003986033.1 Strain : Gardnerella vaginalis ATCC 14019 Genome accession: NC_014644 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 1138197 - 1138685 bp Length : 489 bp Strand : - Note : COG: COG0691; Pfam: PF01668; InterPro: IPR000037 DNA sequence : TTGGATAAAAAACCTGGTTCAGATGGTACTTTAACTGTTGCAAGAAATAAAAAAGCAAATCACGACTATGCGATTGAAGA TTGCTATGAAGCAGGTATTGCTCTTACTGGCACAGAGGTTAAGTCTTTGCGCGAAGGCAGAGCTTCTTTAGCTGAAGCGT TTGTGAATATTGATAGACGTGGTGAGATTTGGCTAGAAGGCGCAAATATTCCAGAGTACTTAAATGGCACTTGGAATAAT CATGCTCCTAAGCGCAAGCGCAAGTTGCTTCTTCATGCGATTCAAATTGCTAAGCTTTCTAGGCAGATTGAAGCTAAAGG TTATACCATTGTGCCTTTGAGGATTTATTTTAAAGGCAGCTACGCTAAAGTTGAGATTGCTTTGGCGCGAGGCAAAAAAG AGTACGATAAGCGTCAAGCGTTGCGCGAAGAACAAGATAAGCGCGAAGCATTGCGCGCTATGCGATACAAGAATATGCAA TCTAGGTGA Protein sequence : MDKKPGSDGTLTVARNKKANHDYAIEDCYEAGIALTGTEVKSLREGRASLAEAFVNIDRRGEIWLEGANIPEYLNGTWNN HAPKRKRKLLLHAIQIAKLSRQIEAKGYTIVPLRIYFKGSYAKVEIALARGKKEYDKRQALREEQDKREALRAMRYKNMQ SR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 1e-29 | 50 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 7e-31 | 48 |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 6e-18 | 41 |
