Gene Information

Name : HMPREF0421_20919 (HMPREF0421_20919)
Accession : YP_003986024.1
Strain : Gardnerella vaginalis ATCC 14019
Genome accession: NC_014644
Putative virulence/resistance : Unknown
Product : pyridoxine biosynthesis protein
Function : -
COG functional category : H : Coenzyme transport and metabolism
COG ID : COG0214
EC number : -
Position : 1126439 - 1127374 bp
Length : 936 bp
Strand : +
Note : COG: COG0214; Pfam: PF01680; InterPro: IPR001852

DNA sequence : 
ATGGCAGAGAACTTGAATACTACGGTAACAGTAAACGAATCCTCGGATCCGCAAAATAACGGCAGCCAAGACCGCACTGC
TCTAAATCGCCAGCTTGCACAAATGCTTAAGGGCGGCGTGATTATGGATGTTACTACTCCAGAGCAGGCGCGAATTGCTG
AAGATTCTGGAGCTTGCGCTGTTATGGCATTGGAGCGTATTCCTGCCGATATTCGCGCGGCTGGCGGAGTTTCTAGAATG
AGCGACCCAGCTATGATTCACGGCATTCAGGAAGCTGTGTCTATTCCTGTTATGGCAAAATGCCGTATTGGTCACTTTGT
TGAAGCGCAGGTGCTTGAGGCTATTGAGATTGATTACATTGACGAAAGCGAAGTGCTTAGCCCAGCAGACGACGTTTACC
ACATTAACAAGCGCGATTTTGCAGTTCCATTTGTTTGCGGTGCAAAAGATTTGGGAGAAGCTTTGCGCAGGATTAACGAG
GGTGCTTCCATGATTCGCACAAAGGGCGAGCCTGGAACTGGAGATGTTATTCAAGCTGTGCGCCACATGCGCATGATGAA
TTCCGCAATACGCAAGCTTACAAGCATGCGCGAAGATGAGCTTTTTGAGGAAGCTAAGACTTTGCGCGTGCCTTTCGATC
TTGTAAAGTACGTTGCACAAAATGGCAAACTTCCTGTTGTAAACTTTGCAGCTGGCGGTGTTGCAACCCCTGCAGACGCT
GCTTTAATGATGCAGCTTGGTGCAGAAGGCGTTTTTGTTGGCTCTGGCATCTTTAAGTCTGGAGATCCAGCAAAGCGCGC
TGCTGCAATAGTTAAGGCTGTGACTAATTACAAAGACGCTAAAATGATTGCTAAGCTTTCCGAGAATTTGGGCGAAGCGA
TGGTTGGTATTAACGAGCAGGAAATCAAGCTTTTAATGGCAAATCGCGGCGAGTAA

Protein sequence : 
MAENLNTTVTVNESSDPQNNGSQDRTALNRQLAQMLKGGVIMDVTTPEQARIAEDSGACAVMALERIPADIRAAGGVSRM
SDPAMIHGIQEAVSIPVMAKCRIGHFVEAQVLEAIEIDYIDESEVLSPADDVYHINKRDFAVPFVCGAKDLGEALRRINE
GASMIRTKGEPGTGDVIQAVRHMRMMNSAIRKLTSMREDELFEEAKTLRVPFDLVKYVAQNGKLPVVNFAAGGVATPADA
ALMMQLGAEGVFVGSGIFKSGDPAKRAAAIVKAVTNYKDAKMIAKLSENLGEAMVGINEQEIKLLMANRGE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pdxS YP_005137204.1 pyridoxine biosynthesis protein Not tested Not named Protein 6e-87 71
DIP0227 NP_938620.1 pyridoxal biosynthesis lyase PdxS Not tested Not named Protein 5e-87 71
pdxS YP_005141805.1 pyridoxine biosynthesis protein Not tested Not named Protein 7e-87 71