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Name : tkt (HMPREF0421_20791) Accession : YP_003985896.1 Strain : Gardnerella vaginalis ATCC 14019 Genome accession: NC_014644 Putative virulence/resistance : Unknown Product : transketolase Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG0021 EC number : 2.2.1.1 Position : 966294 - 968450 bp Length : 2157 bp Strand : - Note : COG: COG0021; Pfam: PF00456,PF02779,PF02780; InterPro: IPR005478 DNA sequence : ATGGCCAGCGTAAGCTGTGCGCAAAAAACCCGAATTATTGGAAGGAAAGTAGATCACATGACCGAATTCAACTGGTCTGC ATTAGACGAGCGCGCCGTAAAGATGGCGAAGGTTCTCTCGGCTGATGCTGTTGAGCGAGCAGGACACGGACATCCTGGCT CCCCTGTTTCATTGGCACCGATTGCGTACACCTTGTACCAGCACTTCATTAAGCACGATCCAGCTGACCCAAAGTGGGCC GGTCGCGATCGTTTTATTCTTTCTGGCGGCCACGCTTCGCTTACGCAATATGTGCAGCTGTTCTTCTCTGGATACGGCTT GACTCTTGATGATCTCAAGTATTTCCGTGGCGGCGCAGACACGCGTACTCCAGGTCACCCAGAATATGGCTTAACTCCAG GCATTGAAATGACCACTGGTCCTCTTGGACAGGGTCTTGCTTCTGCTGTTGGTTTCGCTTATGGTCAGCGTTTTGAGCGT GGTCTTCTTGATCCAGAAGCTCCAGCTGGCACTTCCCCATTCGATCACAAGGTTTGGGTTATCTGCGGCGAAGGCGACGT TGAGGAAGGTGTTTCTTCCGAGGCTGCTTCCTTGGCTGGAAACCAAAAGCTTGGTAATTTGACTGTAATCTTCGATGCAA ACCACATTCAGATCGAAGGCGACACTAAGCTCACCTTCTCCGAGGATATTCTTGCTCGTTACCGTGCATACGGTTGGTAC ACCGACGAAGTTAGCTTCATTCAGCCAGACGGCTCCTACAAGGAAGACGTTCAGGCTTTGGCTGCAGCTATTGAAAAGGC TCAGGAAGTTACCGATAAGCCTCACTTCATTAAGGTTAATACTTTGATTGCTTGGCCAACCCCAGGCAAGACCAACAATG AAGCTTCTCACGGCTCTAAGCTTGGTGAAGAAGCTGTTAAGGGTTTGAAGGAACTTTGCGGTTTCGACCCAGAAGTTTCG TTCCCAATCGACGAAGAAGCTTTGGCTCATGCTCGTAAGGTTGCTGAACGCGGTTTGGCTGCTCACAAGGCTTGGGATGA AGCTCTTGCAAAGTGGGCTGCTCAAAACCCAGATAAGGCTGCTCTATACGAGCGCCTTAAGGCTGGCAAGCTTCCTGAAG GCTTCGACAAGACTATCGACGACTTGGTTGCTGGTTTCGAAGTCGGTTCCAAGGTGGCTACCCGTAAGGCTTCTGGCGCA GTTCTTAACGCAATTGCTGCTGTTATGCCAGAACTTTGGGGCGGCTCCGCTGATTTGGGCGGCTCCAACAACACCAACAT TAAGGGCGCTGACTCCTTCGGTACATCCGAGGATGCAACTCGTACTTGGCCAAATGTTTCCGAGTACGGCCGCCAGCTTC ACTTCGGTGTGCGCGAGTTCGCAATGGGTGCTATTACCAACGGTATTTTGCTTGGTTCTGACACTCGCCCATTCAACGGC ACATTCTTCCAGTTCTCTGACTACGAGCGCCCAGCAGTTCGCTTGGCTGCTTTGATGGAGATTCCAAACCTCTACGTTTG GACTCACGACTCCGTAGCCTTGGGCGAAGATGGTCCAACTCACCAGCCAATCGAGCACTTGGCTGCTTTCCGCGCTATTC CTCAGCTTGAGGTTGTACGCCCTGCAGATGAGTATGAGACTGCTGAAGCTTACCGCTACTTCTTCGAGAAGAAGAACAAC TACCCAACCGCTATGATTTTGACACGTCAAGGCGTACCAACCCTCGCAGAAACTGCTGAGAAGGCTCGCGAAGGCGTAAA GCACGGCGGTTATGTGTTGGTTGACTGCGAAGGCACTCCAGACGTAATCATCATGGCTACTGGTTCTGAAGTTCAGTGGG CTGTTGCTGGCGCCAAGACTTTGGCAGCAGAAGGCATTAAGGCTCGCGTTCTTTCTATGCCATCTCTCGAGTGGTTCGAA GAGCAAGACGAAGAGTACAAGGAAGCAATCCTTCCAAAGTCCGTCAAGGCTCGCGTTTCCATCGAAGCTGGTTTGGCATT GCCTTGGTACAAGTATCTTGGCGATTGCGGCAAGGCTGTTTCTATCGAACAGTACGGCTTGCAGGGTGACGGCGGTCAGA ACATGATCGATTTGGGCATTACTGCTGAGCACGTAGTAGAAGCTGCTAAGGCTTCTATCGAAGAAGCACGCGCTTAA Protein sequence : MASVSCAQKTRIIGRKVDHMTEFNWSALDERAVKMAKVLSADAVERAGHGHPGSPVSLAPIAYTLYQHFIKHDPADPKWA GRDRFILSGGHASLTQYVQLFFSGYGLTLDDLKYFRGGADTRTPGHPEYGLTPGIEMTTGPLGQGLASAVGFAYGQRFER GLLDPEAPAGTSPFDHKVWVICGEGDVEEGVSSEAASLAGNQKLGNLTVIFDANHIQIEGDTKLTFSEDILARYRAYGWY TDEVSFIQPDGSYKEDVQALAAAIEKAQEVTDKPHFIKVNTLIAWPTPGKTNNEASHGSKLGEEAVKGLKELCGFDPEVS FPIDEEALAHARKVAERGLAAHKAWDEALAKWAAQNPDKAALYERLKAGKLPEGFDKTIDDLVAGFEVGSKVATRKASGA VLNAIAAVMPELWGGSADLGGSNNTNIKGADSFGTSEDATRTWPNVSEYGRQLHFGVREFAMGAITNGILLGSDTRPFNG TFFQFSDYERPAVRLAALMEIPNLYVWTHDSVALGEDGPTHQPIEHLAAFRAIPQLEVVRPADEYETAEAYRYFFEKKNN YPTAMILTRQGVPTLAETAEKAREGVKHGGYVLVDCEGTPDVIIMATGSEVQWAVAGAKTLAAEGIKARVLSMPSLEWFE EQDEEYKEAILPKSVKARVSIEAGLALPWYKYLGDCGKAVSIEQYGLQGDGGQNMIDLGITAEHVVEAAKASIEEARA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| APECO1_2641 | YP_859417.1 | transketolase | Not tested | Not named | Protein | 9e-105 | 41 |
| tktA | AAO17218.1 | TktA | Not tested | tcd island | Protein | 2e-105 | 41 |
