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Name : clpC (HMPREF0421_20663) Accession : YP_003985768.1 Strain : Gardnerella vaginalis ATCC 14019 Genome accession: NC_014644 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit ClpC Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 818696 - 821185 bp Length : 2490 bp Strand : + Note : COG: COG0542; Pfam: PF02861,PF00004,PF02151,PF07724; InterPro: IPR003593 DNA sequence : ATGTTTGAACGGTTCACTGACCGCGCTCGGCGTGTGATTGTGCTAGCTCAGGAAGAAGCGCGCTCTCTTCAGCATAACTA TATTGGTACCGAGCATATTCTCTTAGGTCTTATTAGAGAAGGCGAAGGAATAGCAGCAAAAGCTTTAAACGCCAAAGGCG TAGAATTAGACAATACTCGTAAACAAATAAAAGAAATGATTGGCACTGGTACTGTCTCGCCTAGTGGACACATACCTTTT ACTCCGCATGCTAAACAAGTGCTTGAGCTTAGTTTGCGTGAAGCATTGCAATTGGGGCACAGCTATATTGGTACCGAGCA TATTCTCTTAGGTCTTATTAGAGAAGGCGAAGGTGTTGGAACGCAGGTGCTTATTAAGATGGAGGTCGATTTAGGAGATC TTCGTAGCACTGCAATGGATTTGATTCGAGGAAATTCTGGATTACCAGAAGACGGTCAGAAGGGTGATTTGGCTAATGCT GGAGGAGTGCAGGATAAGAGGAATCAGTCTGGTTCTGCGCTGCTAGATCAGTTCGGAAGGAATCTTACTACAGAAGCTGA GCAAGGGAAGCTTGATCCTGTTATTGGTCGTTCAAAAGAGATTGAGCGCGTTATGGTTGTGCTTTCTCGCAGAACTAAGA ATAATCCTGTTCTTATAGGTGAACCTGGTGTTGGTAAAACAGCTGTTGTGGAAGGTCTTGCACAGAAGATTGTTGCTGGA GATGTGCCAGAAACGTTAAAGGGCAAGCAGGTTTATTCTCTTGACTTGGGTTCGATGGTTGCTGGATCTCGTTATCGTGG CGATTTTGAAGAGCGCTTAAAGAAGGTGCTTAAAGAAATTAAGACTCGTGGAGATATAGTTCTATTTATTGATGAGATTC ATACTATTGTTGGTGCTGGGTCTGCAGATGGTGCTTTGGGTGCTTCTGACATGCTTAAACCTATGCTTGCGCGTGGTGAG CTACAGACGATTGGTGCTACAACTACCGATGAGTATAGAAAGTATATTGAAAAGGATGCGGCTTTGGAAAGAAGATTCCA GCCTATTCAAGTTCAAGAGCCTTCTATTGCAGAGACAATTGAGATTCTAAAAGGTTTGCGTGCACGCTACGAGAATCATC ATCACGTAACTATTACGGATGCTGCTTTGCAGTCTGCAGCCGAAATGTCTGCTCGCTATATTCAAGATAGGAATTTGCCA GATAAGGCGATTGATCTTATTGATGAAGCTGGAGCTCGCCTACGTATTAAGCGATTGACAGAGCCACCAGAGCTTAAGGA ACTTGATTCTAAGATTTCTAAACTTTCAGAAAAGAAAGATGAAGCTATTAAGAATCAGGACTTTGAGAAGGCTGCCGACT TGCGAGATGAGCAGGAAAAGCTTGAGGAAGAACGTAAGAATAAAGAGCAGGCTTGGCGTGAGGGCGAGTCTAATGTGAAT ATGGTTGTAGACGAGGATGTTATTGCATCTGTTGTTTCTAATACAACTGGTATTCCTGTTGTTAAGCTAACTCAAGCGGA ATCCAAAAAGTTGCTCGGTATGGAAGCGGAGCTTCATAAGCGTATTATTGGTCAAGATGAGGCTGTTTCTGCACTTTCTC GTTCTATTCGTCGTGCGCGAGTAGGATTGAAAGATCCAAAGCGTCCTTCTGGATCGTTTATTTTCGCTGGTCCTACGGGA GTTGGTAAGACAGAGCTTGCTAAAACCTTGGCTCAATTCCTGTTCGACGATGATGATGCTTTGATTCGTGTTGATATGTC GGAGTTTGCGGAAAAGTATGCGGCTTCTCGTCTTTTCGGTGCTCCTCCAGGATATGTTGGCTACGAGGAGGGTGGCGAGC TTACAGAGAAGGTTCGTAGAAAGCCATTCTCGGTGGTGCTTTTTGACGAAATTGAAAAGGCTCATCCAGATATTTTCAAC ACGCTTTTGCAAGTGTTAGACGACGGTCATTTAACAGATGGCCAAGGAAGAAAAGTTGATTTTAAGAACACGATTATTAT CTTGACTACAAATCTTGGTACTCGTGATATTGCTAAGTCAGCGAATACTGGTTTTAGTCTTGGCAATAATGCGGATGCAT CTTACCAGAGGATGAAGGATCAGGTTAATTCGGAATTGAAGCGTCAGTTCCGTCCGGAATTCCTAAACCGTTTGGATGAT ACGATTGTATTCCGTCAGCTTACTGAGCCAGAGGTTCGTCAGATTGTTGATTTGGACGTTAAGCGTTTGAATGACCGTCT GTTTGAACGTCATATGACTTTGGAGCTTACAGATGCAGCTAAGAATCTTCTTGCGCAAAAGGGCTTTGATCCTCTTCTTG GAGCAAGACCGTTGCGAAGAGTTATTCAGCGCGATATTGAGGATGCCATAAGTGAGAAGATTTTGCTTGGCGACTTAACA GATGGTGAACGCGTTGAAGTTGATGCAGAAGGAGAAGGTTTGCTGGGGGAGTTTATTTTCCGCGGCATAAAGTTTGATGT TGAGTCTTGA Protein sequence : MFERFTDRARRVIVLAQEEARSLQHNYIGTEHILLGLIREGEGIAAKALNAKGVELDNTRKQIKEMIGTGTVSPSGHIPF TPHAKQVLELSLREALQLGHSYIGTEHILLGLIREGEGVGTQVLIKMEVDLGDLRSTAMDLIRGNSGLPEDGQKGDLANA GGVQDKRNQSGSALLDQFGRNLTTEAEQGKLDPVIGRSKEIERVMVVLSRRTKNNPVLIGEPGVGKTAVVEGLAQKIVAG DVPETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEIKTRGDIVLFIDEIHTIVGAGSADGALGASDMLKPMLARGE LQTIGATTTDEYRKYIEKDAALERRFQPIQVQEPSIAETIEILKGLRARYENHHHVTITDAALQSAAEMSARYIQDRNLP DKAIDLIDEAGARLRIKRLTEPPELKELDSKISKLSEKKDEAIKNQDFEKAADLRDEQEKLEEERKNKEQAWREGESNVN MVVDEDVIASVVSNTTGIPVVKLTQAESKKLLGMEAELHKRIIGQDEAVSALSRSIRRARVGLKDPKRPSGSFIFAGPTG VGKTELAKTLAQFLFDDDDALIRVDMSEFAEKYAASRLFGAPPGYVGYEEGGELTEKVRRKPFSVVLFDEIEKAHPDIFN TLLQVLDDGHLTDGQGRKVDFKNTIIILTTNLGTRDIAKSANTGFSLGNNADASYQRMKDQVNSELKRQFRPEFLNRLDD TIVFRQLTEPEVRQIVDLDVKRLNDRLFERHMTLELTDAAKNLLAQKGFDPLLGARPLRRVIQRDIEDAISEKILLGDLT DGERVEVDAEGEGLLGEFIFRGIKFDVES |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 67 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_003985768.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VFG0079 | Protein | 0.0 | 56 |
| clpC | YP_003985768.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VFG0080 | Protein | 1e-142 | 51 |
