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Name : pfo (HMPREF0421_20066) Accession : YP_003985175.1 Strain : Gardnerella vaginalis ATCC 14019 Genome accession: NC_014644 Putative virulence/resistance : Virulence Product : perfringolysin O Function : - COG functional category : - COG ID : - EC number : - Position : 66002 - 67627 bp Length : 1626 bp Strand : + Note : Pfam: PF01289; InterPro: IPR001869 DNA sequence : ATGCCATGCATAGAAGCAAATAAGTTACGGTATCTCATAAAAAATAACAGAAAATATCATAATATAAGGATACATATGAA GAGTACAAAGTTCTACCGTAATGCAGCAATGTTGCTCCTCGCGGGCGCAACTATTGTTCCACAATGCTTAGCAGCACCAG CAATGGCCGCTCCTTCCGCTAAGGATTCTGAACCAGCTACATCTTGCGCAGCTAAGAAAGACTCGTTGAATAATTATTTG TGGGATTTGCAATACGATAAAACAAACATTCTCGCCCGTCATGGCGAAACCATTGAGAACAAATTCTCCAGCGACAGCTT CAACAAGAACGGTGAATTCGTTGTTGTTGAGCATCAGAAGAAGAACATCACCAATACAACTTCAAATTTGTCGGTTACTT CCGCCAACGATGATCGCGTATACCCAGGTGCTCTTTTCCGTGCTGATAAGAATTTGATGGACAATATGCCAAGCCTGATT TCTGCAAACCGCGCTCCAATAACGTTGAGCGTTGATTTGCCGGGATTCCACGGCGGCGAAAGTGCTGTAACTGTTCAGCG CCCAACCAAGAGCTCTGTAACTTCCGCAGTGAACGGCTTAGTTTCTAAGTGGAATGCACAATATGGAGCAAGTCATCATG TTGCAGCTCGCATGCAGTACGATTCTGCAAGCGCACAAAGCATGAACCAGCTCAAGGCTAAGTTTGGTGCTGATTTTGCC AAGATTGGTGTTCCGCTGAAGATTGATTTCGATGCAGTACACAAGGGTGAGAAGCAGACTCAAATTGTGAACTTCAAGCA AACTTACTACACCGTAAGCGTTGATGCACCAGATAGCCCAGCAGATTTCTTTGCTCCTTGCACTACGCCAGACAGCTTGA AGAACCGTGGCGTTGACAACAAGCGCCCACCAGTTTACGTGTCAAACGTAGCTTATGGTCGCTCAATGTACGTAAAGTTC GATACCACCAGCAAGAGCACTGATTTCCAGGCTGCGGTAGAAGCAGCAATTAAGGGCGTAGAAATCAAGCCAAACACCGA ATTCCATCGCATTCTCCAGAATACTTCTGTTACTGCAGTGATTCTTGGTGGCAGCGCTAATGGTGCAGCTAAAGTTATTA CAGGCAATATCGATACGCTTAAGGCTTTGATTCAGGAAGGTGCAAATTTGAGCACCTCTAGCCCAGCGGTTCCAATTGCA TACACCACTTCCTTCGTCAAGGATAACGAAGTAGCAACTTTGCAATCCAACAGCGATTATATTGAAACGAAGGTTTCTTC TTATCGCAATGGCTACTTGACTTTGGACCACCGTGGAGCTTATGTAGCTCGCTACTACATCTACTGGGATGAGTACGGCA CCGAAATTGACGGCACTCCTTACGTGCGTTCTCGCGCTTGGGAAGGCAATGGTAAGTATCGTACAGCTCACTTCAACACC ACTATTCAGTTCAAAGGAAATGTACGCAATCTACGAATCAAGTTGGTTGAAAAGACTGGTTTGGTTTGGGAACCATGGCG CACAGTATATGACCGTTCTGATTTGCCACTAGTTCGTCAGCGTACTATTAGCAACTGGGGCACAACCTTGTGGCCTCGCG TTGCTGAAACTGTAAAGAACGACTGA Protein sequence : MPCIEANKLRYLIKNNRKYHNIRIHMKSTKFYRNAAMLLLAGATIVPQCLAAPAMAAPSAKDSEPATSCAAKKDSLNNYL WDLQYDKTNILARHGETIENKFSSDSFNKNGEFVVVEHQKKNITNTTSNLSVTSANDDRVYPGALFRADKNLMDNMPSLI SANRAPITLSVDLPGFHGGESAVTVQRPTKSSVTSAVNGLVSKWNAQYGASHHVAARMQYDSASAQSMNQLKAKFGADFA KIGVPLKIDFDAVHKGEKQTQIVNFKQTYYTVSVDAPDSPADFFAPCTTPDSLKNRGVDNKRPPVYVSNVAYGRSMYVKF DTTSKSTDFQAAVEAAIKGVEIKPNTEFHRILQNTSVTAVILGGSANGAAKVITGNIDTLKALIQEGANLSTSSPAVPIA YTTSFVKDNEVATLQSNSDYIETKVSSYRNGYLTLDHRGAYVARYYIYWDEYGTEIDGTPYVRSRAWEGNGKYRTAHFNT TIQFKGNVRNLRIKLVEKTGLVWEPWRTVYDRSDLPLVRQRTISNWGTTLWPRVAETVKND |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hly | AAA69525.1 | listeriolysin O | Virulence | LIPI-1 | Protein | 2e-96 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| pfo | YP_003985175.1 | perfringolysin O | VFG1363 | Protein | 1e-128 | 53 |
| pfo | YP_003985175.1 | perfringolysin O | VFG2275 | Protein | 3e-90 | 42 |
| pfo | YP_003985175.1 | perfringolysin O | VFG0074 | Protein | 2e-96 | 41 |
