Gene Information

Name : HMPREF0421_20629 (HMPREF0421_20629)
Accession : YP_003985734.1
Strain : Gardnerella vaginalis ATCC 14019
Genome accession: NC_014644
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1135
EC number : 3.6.3.-
Position : 782876 - 783739 bp
Length : 864 bp
Strand : -
Note : COG: COG1135; Pfam: PF00005; InterPro: IPR003593

DNA sequence : 
GTGCCTCATATTTGCTTTTCAAAATCAGTGAGAGATAATATGATTCAAATTGAGCATCTTTATAAAACTTACTCAAGTGG
TAAGCAATCGCACGAAGCACTTAACGATATTAATTTAACTATTGAATCAGGCGAAGTATTTGGTATTTTGGGATCTTCTG
GAGCTGGAAAATCATCATTAGTCAGATGCATGAACTTGTTAGAACGTCCAACATCTGGAAGAGTGCTAATAGACGGAAAA
GATATTACGGACGCCAAAAATAGAGATTTATCTAAAATAAGATCGAATATTGGAATGATTTTCCAAAACTTTAGTCTTTT
TCAACAGCGAACTGTGTTACAAAATGTGACTTTTCCTTTGGAACTAAACAACACTCCTAAAGAAAAAAGAGAAGAACGAG
CAAAGTATTTACTCGATTTAGTTGGATTAAAAGATTTAGCAAACCGCTACCCTGTTCAGCTTTCTGGCGGACAACAGCAA
AGAGTTGCAATAGCGAGAGCACTTGCTAATAATCCTTCTATAATGCTTTGTGACGAAGCAACAAGCGCCTTGGATTCAAC
AACTACAGCACAAATACTTGACTTGCTTAGAAGAATCAACCGAGATCTTAACGTAACACTGGTTATTATTACTCACTCGT
TAGCAGTAGCAAGAAATATTTGCGATAGGGTTGCTATGATTGACGGCGGAAAAATCGTAGAGATCGGTGACACTTCAACA
CTTTTCAAAAATCCTCAAAGCAATATTTTAAAAACGCTTATTGCAGACGAACATGTTGAAAACCATAGGGGAACTAAATC
CAATAATAGTAATTCCGAAAATGGAATAACCACTAATAGCGCAACAAACAATGGGGTGAAATAA

Protein sequence : 
MPHICFSKSVRDNMIQIEHLYKTYSSGKQSHEALNDINLTIESGEVFGILGSSGAGKSSLVRCMNLLERPTSGRVLIDGK
DITDAKNRDLSKIRSNIGMIFQNFSLFQQRTVLQNVTFPLELNNTPKEKREERAKYLLDLVGLKDLANRYPVQLSGGQQQ
RVAIARALANNPSIMLCDEATSALDSTTTAQILDLLRRINRDLNVTLVIITHSLAVARNICDRVAMIDGGKIVEIGDTST
LFKNPQSNILKTLIADEHVENHRGTKSNNSNSENGITTNSATNNGVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAR0461 YP_039910.1 ABC transporter ATP-binding protein Not tested vSa¥á Protein 4e-50 45
SAS0419 YP_042546.1 ABC transporter ATP-binding protein Not tested vSa¥á Protein 2e-50 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF0421_20629 YP_003985734.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 4e-33 42