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Name : lysS (HMPREF0421_20537) Accession : YP_003985642.1 Strain : Gardnerella vaginalis ATCC 14019 Genome accession: NC_014644 Putative virulence/resistance : Unknown Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 663495 - 665168 bp Length : 1674 bp Strand : + Note : COG: COG1190; Pfam: PF01336,PF00152; InterPro: IPR002313 DNA sequence : ATGACTGACACGAATACTGCAATGTCTGCCGCACAAAACGCCGCAGAAAATGACGTAACAGATAACGCCAATGAAATTGA CACCGTTGAGCATGCTGAGATGCTGCTCGCTCAAGATGAGGCTATTGCTAAGCGCGTAAATGATGGTGCTACTCTTGACG AAGCAATTGATCCAAGCAATAAAGAGTTTGGTCCGCTTGCTCACCCAGAGCAGGTGCAGATGCGTGTTGCTAAGCGTGCG ATGATGCTTAAGGAGGGTGTGCAGCCATACCCAGTGCATCTTAATGTTACGGATACTATCGAAAAGGTTCGTGCTGATTT TGATGGCAAGCTTGAAGCTGGCGAAGAAACTGATACCGAGGTTGGTATTGCAGGTCGCGTGCTTTTCTTGCGTAATGCTG GTGGCTTGTGCTTCGTTAAGCTTGCTGCTGGTGACGGCACTACGATTCAGGCGATGGTTTCCAAGAAGGAAATTGGCGAA GAATCTATTAAGAGCTTCAAGCAGATGGTTGATTTGGGCGACCATTTGTATGTTCGCGGTCGCGTTATTTCTTCTAAAAC TGGCGAGCTTTCCGTATTCGCAACTGAGTGGGCAATTGCAGCTAAGGCTTTGCAGCCACTTCCGGCTTTGCATAAGGAAT TAAGCGACGATACTCGTACGCGCAAGCCTTATATTGGCATGATTGCGGACGAGAAGATTCGCGATATGGTTCGCAGGCGT TCTCATGCTGTAGCTTCTCTTCGCCGCACTTTCGACAGCCACGACTTCTTGGAAGTTGAAACACCAATGTTGCAAACGGT TCACGGCGGCGCTGCTGCTCGTCCGTTTACAACTCATATGAACGCGTTCGACATTGATCTTTATTTGCGTATTGCGCCAG AGCTTTTCTTGAAGCGCTGCTTGGTTGGTGGCATTGACCGCGTGTTTGAAATCAACCGTGATTTTAGAAACGAAGGCGTA GACGCAACTCACGCTCCAGAGTTTACAATGCTCGAAGCTTACCAAGCTTATGGCACTTACGATACGATTGGAGCTCTTAC TAAAGAGCTGATTCAAAAGGCTGCTGTCGACGCTTTCGGCTCCACTAAGGTGACTTTGCTTAACGGCGAAGAGTACGATT TTGGCGGCGAGTGGAAGCAGATTACCATGTACGGCTCGCTTTCTGAGGCTTTGGGCGAGGAGATTACGCCGGAAACTTCT GTTGAGCATTTGGGTGCGATTGCAGACAAGCTTGGCGTTGAGCGCGACGAAGTGGAGAATCACGGCAAGTTGGTTGAGCA CTTGTGGGAGCACTTCTACGAGGATAAGCTTTATGAGCCAACGTTTGTGCGCGACTTCCCAGTGGAAACCAGCCCGCTTG TTAAGGGTCACCGTACTAAGCCAGGAATGGTTGAAAAATGGGATTTGTATGTGCGTGGCTTTGAGCTTGCAACCGGCTAC TCCGAGCTTAACGATCCTGTTGTGCAGCGCGAGCGCTTTGTTGCTCAAGCTAAGGATGCTTTGGCTGGCGATGTTGAGGC AATGGATATTGACGAGGACTTTATTGAGGCTCTCGGCGTCGGTATGCCTCCTGCTGGCGGCATGGGAATGGGTATTGATC GCTTGCTGATTGCGCTTACGGGCGCAACCATTCGCGAGACGATTACGTTCCCACTCGTAAAGCCTCTTCGCTAA Protein sequence : MTDTNTAMSAAQNAAENDVTDNANEIDTVEHAEMLLAQDEAIAKRVNDGATLDEAIDPSNKEFGPLAHPEQVQMRVAKRA MMLKEGVQPYPVHLNVTDTIEKVRADFDGKLEAGEETDTEVGIAGRVLFLRNAGGLCFVKLAAGDGTTIQAMVSKKEIGE ESIKSFKQMVDLGDHLYVRGRVISSKTGELSVFATEWAIAAKALQPLPALHKELSDDTRTRKPYIGMIADEKIRDMVRRR SHAVASLRRTFDSHDFLEVETPMLQTVHGGAAARPFTTHMNAFDIDLYLRIAPELFLKRCLVGGIDRVFEINRDFRNEGV DATHAPEFTMLEAYQAYGTYDTIGALTKELIQKAAVDAFGSTKVTLLNGEEYDFGGEWKQITMYGSLSEALGEEITPETS VEHLGAIADKLGVERDEVENHGKLVEHLWEHFYEDKLYEPTFVRDFPVETSPLVKGHRTKPGMVEKWDLYVRGFELATGY SELNDPVVQRERFVAQAKDALAGDVEAMDIDEDFIEALGVGMPPAGGMGMGIDRLLIALTGATIRETITFPLVKPLR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 2e-137 | 57 |
