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Name : HMPREF0421_20288 (HMPREF0421_20288) Accession : YP_003985395.1 Strain : Gardnerella vaginalis ATCC 14019 Genome accession: NC_014644 Putative virulence/resistance : Unknown Product : oligopeptide/dipeptide ABC transporter ATP-binding protein Function : - COG functional category : R : General function prediction only COG ID : COG1123 EC number : - Position : 341598 - 343493 bp Length : 1896 bp Strand : + Note : COG: COG1123; Pfam: PF00005,PF08352; InterPro: IPR003593 DNA sequence : ATGACTGATATGGTGAATGACGCAATTAAGGAAGATTCTGTGATGGAAAATCAGAACAACGAACCACTTCTTTCTGTACG CAATTTGCAAATTAGCTTTGCTTCGGAAGCTGGTACGGTTCATGCAGTACGCAATATGAATTTTGATTTGTACCGCGGAA AAACCATTGGTATTGTAGGTGAATCTGGATCTGGTAAGTCGGTTACTTCTCTTGCTGTTATGGGTTTGCTGGATAAGAAC GCGTCTGTTAAGGGTTCTGTTGTTTATAAGGGCGAAGAGCTGTTAACGAAGTCTGATGCAGAGATGAGTAAGATTCGTGG CAAGAATATTGCTATGGTGTTCCAGGATCCTCTTTCTGCTTTAACTCCAGTGTTTTCTATTGGAGATCAGCTTAAGGAAG CTTTGGTTATTCATAATCCAAATATGACCGAAGATCAGATTCGTGAGCGCTCTATTGAATTGCTTAACTTGGTTGGTATT ACTAAGCCAGCTGAGCGCTTAAAGGCTTTCCCTCACGAGTTTTCTGGCGGCATGCGTCAGCGCGTTATGATTGCAATGGC AATTGCTAACAACCCAGATATTATTATTGCTGATGAGCCTACTACCGCTTTGGATGTTACGATTCAGGCTCAGGTTTTGG ATGTTTTGAAGAAAGCGCAGAAAGAAACTGGCGCCGCAATGATCTTCATTACTCACGATTTGGGTGTTATTGCTGGCGTT GCAGACGAAGTTATTGTTATGTATGCGGGTCATTTGGTTGAGCATAATAGCGTTGAAGAGATTTTTACTCACCCAACTCA GCCATACACAATCGGCTTGCTTGGCGCTGTTCCGCGCGTTGACCAAAAGCGTACTCGCCGCTTAACTCCAATCTCTAAGC CAACAATGGATATGTTGATGGCAGAAGAAAAGAGTGGAGATACTAGCGATATGATGGGTCTTGAGGCAGAAAGCGAAACC GTTCGTGCGCTGCTTCATGCAGAAACCGAAAAAACTATTAAGCCAATGTTTGAGGGCATTCCTCGCGAGGATCGCAAGGT TGTTTTGGATGTTAAGGGCTTAGTTAAGACATTCCCAATTACTGGTGGCGGTTTCTTGCGACGCAAGGTTGGCGAAGTTC GCGCTGTTGATGGCATTGACCTTGAGATTCGCGAAGGCGAAACTGTGGCCCTTGTTGGCGAATCTGGTTCTGGTAAGTCA ACTACTTTGATGGAAATCATGAGTTTAAAGAAGCCAGAAGCTGGCTCTATTACAGTTTTTGGCACCGATCTTAACGATAA GTTGACTAAAGAGCAGCGTCGCGAGCTTCGTTCTAAGATCCAATACGTGTTCCAGGATCCTATGAGCTCTCTTGATCCTC GTATGCTTGTTTACGATATTTTGGCAGAGCCTCTTCATGTTCAAAAGAAGTCTAAAGAAGAGATTCGTCAGCGTATTGCG GAGCTTATGCAGCTTGTTGAGCTGAATCCAGATCAGGTTGATCGCTTCCCAACGCAGTTCTCTGGTGGTCAGCGTCAGCG TATTGCTATTGCTCGCGCTTTGGCTGTAAACCCTAAGCTGCTTCTTCTTGATGAGCCTGTTTCGGCTTTGGATGTTTCTA TTCAAGCTGGCATCATCAACTTGCTTGAAGATTTGCAAGACAAGTTGGGTGTTGCTTACTTGTTTGTGGCTCACAACATG GCGGTTGTTCGTCATATTTCTAGCAGAATTGCTGTTATGTACCACGGACGCATTGTTGAATCTGGCGAAACGGATGAGGT GTTTGATAATCCTAAGCATCCGTACACTAAGGCTTTGATTAGTGCTGTGCCAATTCCAGATCCTGCGATTGAGAAGAATC GTAAGCGTATTATTCTCAATGAAGAAGATTCGTTTGATGACGTTGCAAGCGTCTGA Protein sequence : MTDMVNDAIKEDSVMENQNNEPLLSVRNLQISFASEAGTVHAVRNMNFDLYRGKTIGIVGESGSGKSVTSLAVMGLLDKN ASVKGSVVYKGEELLTKSDAEMSKIRGKNIAMVFQDPLSALTPVFSIGDQLKEALVIHNPNMTEDQIRERSIELLNLVGI TKPAERLKAFPHEFSGGMRQRVMIAMAIANNPDIIIADEPTTALDVTIQAQVLDVLKKAQKETGAAMIFITHDLGVIAGV ADEVIVMYAGHLVEHNSVEEIFTHPTQPYTIGLLGAVPRVDQKRTRRLTPISKPTMDMLMAEEKSGDTSDMMGLEAESET VRALLHAETEKTIKPMFEGIPREDRKVVLDVKGLVKTFPITGGGFLRRKVGEVRAVDGIDLEIREGETVALVGESGSGKS TTLMEIMSLKKPEAGSITVFGTDLNDKLTKEQRRELRSKIQYVFQDPMSSLDPRMLVYDILAEPLHVQKKSKEEIRQRIA ELMQLVELNPDQVDRFPTQFSGGQRQRIAIARALAVNPKLLLLDEPVSALDVSIQAGIINLLEDLQDKLGVAYLFVAHNM AVVRHISSRIAVMYHGRIVESGETDEVFDNPKHPYTKALISAVPIPDPAIEKNRKRIILNEEDSFDDVASV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| dppD | YP_005160017.1 | putative peptide ABC transport system ATP-binding protein | Not tested | Not named | Protein | 1e-94 | 41 |
