Gene Information

Name : HMPREF0421_21236 (HMPREF0421_21236)
Accession : YP_003986341.1
Strain : Gardnerella vaginalis ATCC 14019
Genome accession: NC_014644
Putative virulence/resistance : Virulence
Product : putative cytoplasmic protein
Function : -
COG functional category : S : Function unknown
COG ID : COG5426
EC number : -
Position : 1530284 - 1531087 bp
Length : 804 bp
Strand : -
Note : COG: COG5426; Pfam: PF07090; InterPro: IPR010768

DNA sequence : 
ATGTGTGAGATTTACAAAATAGAGATGTTTTTATTTATTCAAAGCAAAGGAGCTGTTTATATGACAAAAGTTTTACTAGC
TGGAGAATCTTGGATTTCATCCACTACAGAATATAAAGGTTTTGATGAATTCACATCCACTAAATTAGAAATTGGTTGCG
TGGAATTTCTTGATGCTCTTAGAAAGTTTGGTCACGATGTTACACATCTAAAAGCTCATGATGTTCCAGAAAACTTTCCA
TGGACAATGGATGAATTAAACAAATACGATGTTGTGATACTTTCAGATATAGGAAGTAATTCATTTTTACTACCTAATAG
GGTATTTGGTGAAGGAAAAAGATGCGTAAATCGTTTAGATTTATTAGCTAAATGGGTTCGTGAAGGTCATGGACTGATGA
TGGCAGGTGGATATCTTTCCTTTGCTGGATTTGAAGGTAAAGCTCATTATCATGGTACATCTATTGAAGATGTGCTTCCT
GTTGAAATAAGTCCATTTGATGATAGAGCTGAAAAACCTCAAGGTGTAATTCCTAAAATAGTATCCAATCATCCAATTGT
GAATGATTTGAGTCCTATTCCAATTCTTCTTGGATATCAAAAGCTTTTAGCTAAAGAAAGTTCTAATATTCTCATGAAAG
TTGATGATAATCCTTTGCTCATTGTTAATGAGGTATATAAAGGCAGAAGTATTGCTTTTGCATCAGATATAGCTCCTCAT
TGGGCTCCAGAAGCGTTTATGCAATGGAGTGGATATGGTCAACTATTTTCTAATTGTGTTAAGTGGCTTTCTAAAGAAAT
TTAA

Protein sequence : 
MCEIYKIEMFLFIQSKGAVYMTKVLLAGESWISSTTEYKGFDEFTSTKLEIGCVEFLDALRKFGHDVTHLKAHDVPENFP
WTMDELNKYDVVILSDIGSNSFLLPNRVFGEGKRCVNRLDLLAKWVREGHGLMMAGGYLSFAGFEGKAHYHGTSIEDVLP
VEISPFDDRAEKPQGVIPKIVSNHPIVNDLSPIPILLGYQKLLAKESSNILMKVDDNPLLIVNEVYKGRSIAFASDIAPH
WAPEAFMQWSGYGQLFSNCVKWLSKEI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orf245 NP_460346.1 hypothetical protein Not tested SPI-2 Protein 5e-43 46
ORF 245 CAB37418.1 - Not tested SPI-2 Protein 4e-43 46
STY1741 NP_456145.1 Orf 245 protein Not tested SPI-2 Protein 5e-43 46
t1249 NP_805053.1 hypothetical protein Not tested SPI-2 Protein 5e-43 46
SC1402 YP_216389.1 hypothetical protein Not tested SPI-2 Protein 5e-43 46
APECO1_1077 YP_853097.1 hypothetical protein Not tested PAI IV APEC-O1 Protein 3e-43 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF0421_21236 YP_003986341.1 putative cytoplasmic protein VFG0482 Protein 2e-43 46