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Name : rplS (HMPREF0421_21219) Accession : YP_003986324.1 Strain : Gardnerella vaginalis ATCC 14019 Genome accession: NC_014644 Putative virulence/resistance : Unknown Product : 50S ribosomal protein L19 Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0335 EC number : - Position : 1486571 - 1487038 bp Length : 468 bp Strand : - Note : COG: COG0335; Pfam: PF01245; InterPro: IPR001857 DNA sequence : TTGGGAAGGATTATTCAAAGTAAAGTTGAAAAAGTTAAAATTAGACTAACTTACTTTGATGTAGCTTACGTCGATATGCG GCGGCGAGGAGGAATTATCATGGTGAATGCTGTAGAAGCATTTGATGCTAAGCATCTTAAGTCTGCTGAGGAAATCCCAG CTTTCCGTCCTGGAGATACTGTTGACGTTAACGTTAAGATTCAGGAAGGCAACAACACTCGTATTCAGACCTTTACTGGC GTTGTTATCGCTCGTAAGGGTGCTGGTGTTCGCGAGACTTTCGTTGTACGTAAGGTGAGCTTCGGCACTGGTGTTGAGCG TCGCTTCCCACTTCATTCCCCAGCTATCGATTCGATTAAGCTGGTTCGTAGTGGTCGCGTTCGTCGCGCTAAGCTTTACT ACTTGCGCGCTTTGCGTGGTAAGGCTGCTCGTATTGCCGAGCGTCGTGACAACAGCGCTGCTAAGTAA Protein sequence : MGRIIQSKVEKVKIRLTYFDVAYVDMRRRGGIIMVNAVEAFDAKHLKSAEEIPAFRPGDTVDVNVKIQEGNNTRIQTFTG VVIARKGAGVRETFVVRKVSFGTGVERRFPLHSPAIDSIKLVRSGRVRRAKLYYLRALRGKAARIAERRDNSAAK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| rplS | CAA68924.1 | ribosomal protein L19 | Not tested | Internalin | Protein | 4e-18 | 56 |
| rplS | AAS66827.1 | 50S ribosomal subunit protein | Not tested | SSR-1 | Protein | 2e-17 | 53 |
