Gene Information

Name : HMPREF0421_21172 (HMPREF0421_21172)
Accession : YP_003986277.1
Strain : Gardnerella vaginalis ATCC 14019
Genome accession: NC_014644
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG1476
EC number : -
Position : 1402811 - 1403284 bp
Length : 474 bp
Strand : -
Note : Pfam: PF01381; InterPro: IPR001387

DNA sequence :
ATGGTTTCTGTGAATATTCGAGCACTACGTCGCTCAAAAAAAATAACTCAACAAGAGTTAGCTGAAGCATTAGGAGTATC
TCGTAATAGCATTGTGCGATACGAAAATGGTACAAGTGCTATTTCAACTAGGTTAATAGATAAGATTTGTGATAAATTCA
AGGTTTCTCTTTTTGATATCGTACATGAAAAAGAATTATCTGCATCTGATAAATACGATTTGAATATGAAGATTGAAGTT
TTAAAGGAGCGTGGCGCACTTTTACTGGCTCGTTTATATAAATACGAGGATAGTATGAATATACAATTTGATGATTCTTC
TAATGCATGGATTGCAATTAGTGATGATTTATCAGATGTAATTAATACAAAGATTTATACATCTACAAATTTTGAAGATA
TAAATCGTTATATCGGATATTTAGATGGCATAGAACGCTTGCTTGAATACGTAAGTTGCAATAAAAATAGTTAA

Protein sequence :
MVSVNIRALRRSKKITQQELAEALGVSRNSIVRYENGTSAISTRLIDKICDKFKVSLFDIVHEKELSASDKYDLNMKIEV
LKERGALLLARLYKYEDSMNIQFDDSSNAWIAISDDLSDVINTKIYTSTNFEDINRYIGYLDGIERLLEYVSCNKNS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SPN23F_09700 YP_002510951.1 epsilon antitoxin Virulence PPI-1 Protein 2e-39 58
Spaf_1103 YP_006309905.1 transcriptional regulator Not tested FWisland_1 Protein 6e-40 58
SP_1050 NP_345524.1 transcriptional regulator Not tested PPI-1 Protein 6e-39 58
SSU05_0937 YP_001198303.1 transcriptional regulator Not tested 89K Protein 6e-41 57
SSU98_0944 YP_001200502.1 transcriptional regulator Not tested 89K Protein 6e-41 57